Glyma07g26540 - SoyBase

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Report for Sequence Feature Glyma07g26540

Feature Type:	gene_model
Chromosome:	Gm07
Start:	29379178
stop:	29387400
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g26540

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G24764	AT	Annotation by Michelle Graham. TAIR10: microtubule-associated proteins 70-2 \| chr1:8760001-8763256 REVERSE LENGTH=634	SoyBase	E_val: 0	ISS
GO:0007010	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005874	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: microtubule	SoyBase	N/A	ISS
GO:0008017	GO-mf	Annotation by Michelle Graham. GO Molecular Function: microtubule binding	SoyBase	N/A	ISS
PF07058	PFAM	Myosin II heavy chain-like	JGI		ISS
UniRef100_G7L7L2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Microtubule associated protein Type 2 n=1 Tax=Medicago truncatula RepID=G7L7L2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KKW1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=3 Tax=Glycine max RepID=I1KKW1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g26540

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma07g26540 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g170700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g26540

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g26540

Limit To All Plant Sequences

>Glyma07g26540.1   sequence type=CDS   gene model=Glyma07g26540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGAGGTTCCCGGCGACGGCGGCGCGACGCTGTCGGTGTCGGGATCGTTCAAGGAGGGGAGAGGCTCGGCGAGGCGACGCGGCGGCGGAGGAGGAGTGAGACCGCCGAGCATGGACGCCGACGAGTTCATGAATTTGTTGCACGGTTCGGATCCGGTGAAAGTGGAGCTCAATCGCCTCGAGAATGAAGTTCGAGATAAGGACAGAGAATTATCGGAAGCGCAGGCTGAGATCAAAGCCTTGAGGCTCTCTGAACGGCTCAGAGAAAAGGCCGTTGAAGAGCTGACGGAAGAACTGTCAAAGGTTGATGGGAAGCTAAAACTAACCGAATCTCTTCTAGAAAGCAAGAATCTTGAAATTAAAAAAATCAACGATGAAAAGAAAGCATCAATGGCAGCTCAGTTTGCAGCTGAAGCCACTCTTAGAAGGGTCCATGCTGCCCAGAAAGATGATGACATGCCTCCAATAGAAGCAATTCTTGCACCTTTGGAAGCTGAACTCAAGCTTGCTCGGCAAGAGATTGCTAAACTACAAGATGATAACAAAGCTTTAGATCGTCTTACCAAATCTAAAGAAGCTGCACTACTTGAAGCTGAGAGGACTGTCCAGGTTGCCCTGGCTAAGGCATCCATGGTGGATGATCTGCAGAACAAAAATCAAGAGCTAATTAAACAGATTGAGATTTGCCAGGAAGAAAATAAAATTTTGGACAAAATGCATAGACAGAAGGTGGCAGAGGTTGAAAAGCTCACCCAAACTGTTAGAGAGCTAGAAGAGGCTGTCCTTGCAGGTGGTGCAGCCGCAAATGCAGTGAGGGATTATCAGCGGAAAGTTCAAGAAATGAATGAGGAAAGAAAGACTCTAGACAGGGAGTTGGCTCGTGCCAAGGTAACAGCAAACAGAGTAGCTGTTGTGGTTGCAAATGAATGGAAAGATGCTAATGATAAAGTGATGCCTGTCAAACAGTGGCTTGAAGAACGTCGATTCTTGCAGGGAGAAATGCAGCAACTTCGTGACAAGCTTGCTATAGTTGAGCGCGCTGCAAAGTCTGAAGCACAATTGAAAGAAAAATATCATTTACGACTTAAAGTGCTAGAGGAGAGTTTGAGAGGAAATTCTAACAGTAGTAATCGCGGTACCCCAGAGGGAAGAAGTATGAGCAACGGCCCTTCTCGTCGTCAATCCCTAGGCGGAGCTGATAACTTCTCAAAACTAACCTCTAATGGGTTTTTATCTAAAAGATCACCATCCTCTCAACTGAGGTCATCCCTATCCTCTAGCACAGTTTTGAAGCATGCTAAAGGAACATCTAAATCTTTTGATGGTGGTACAAGATCACTGGAAAGGAGTAAAATGCTGCTGAATGGAACACCTCTGAGTTACTCATTTAACCAATCTCTTGAAGAAACCAAAGAGAGAGAGGCAAGTGATAATTGGAAAGGAAATTCAGATGATAAGCCAAATGATTTCCCAACTGTGGATTTAGTGGATAGTGTTCCTGGTGTTTTATATGACTTGCTGCAAAAAGAGGTGATAGCCTTGAGGAAAGCTGGTCATGAGAAAGATCAAAGCCTAAAAGATAAAGGCGATGCTATTGAGATGTTAGCAAAGAAGGTAGATACATTGACCAAAGCCATGGAAGTTGAGGCAAAGAAGATGAGAAGGGAAGTAGCTGCTATGGAGAAGGAGGTAGCTGCTATGCGTGTGGAGAAAGAACAAGAGAACAGAGCAAAGCGGTTCAGCAATGTAAAGGGCCCTGTAAACAGTGCTCAGCAACAGCTAATTTCTGGAAGAAACGTGACACGGGGTGGATTAACACGCAGCACCCAATGA

Predicted protein sequences of Glyma07g26540

Limit To All Plant Sequences

>Glyma07g26540.1   sequence type=predicted peptide   gene model=Glyma07g26540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEVPGDGGATLSVSGSFKEGRGSARRRGGGGGVRPPSMDADEFMNLLHGSDPVKVELNRLENEVRDKDRELSEAQAEIKALRLSERLREKAVEELTEELSKVDGKLKLTESLLESKNLEIKKINDEKKASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELIKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVAVVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDKLAIVERAAKSEAQLKEKYHLRLKVLEESLRGNSNSSNRGTPEGRSMSNGPSRRQSLGGADNFSKLTSNGFLSKRSPSSQLRSSLSSSTVLKHAKGTSKSFDGGTRSLERSKMLLNGTPLSYSFNQSLEETKEREASDNWKGNSDDKPNDFPTVDLVDSVPGVLYDLLQKEVIALRKAGHEKDQSLKDKGDAIEMLAKKVDTLTKAMEVEAKKMRREVAAMEKEVAAMRVEKEQENRAKRFSNVKGPVNSAQQQLISGRNVTRGGLTRSTQ*

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