Glyma07g26470 - SoyBase

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Report for Sequence Feature Glyma07g26470

Feature Type:	gene_model
Chromosome:	Gm07
Start:	29276791
stop:	29291070
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g26470

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G68070	AT	Annotation by Michelle Graham. TAIR10: Zinc finger, C3HC4 type (RING finger) family protein \| chr1:25515412-25516767 REVERSE LENGTH=343	SoyBase	E_val: 7.00E-168	ISS
GO:0006661	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol biosynthetic process	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR11203	Panther	CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR	JGI		ISS
PTHR11203:SF27	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00097	PFAM	Zinc finger, C3HC4 type (RING finger)	JGI		ISS
UniRef100_B9SJ31	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cleavage and polyadenylation specificity factor, putative n=1 Tax=Ricinus communis RepID=B9SJ31_RICCO	SoyBase	E_val: 3.00E-174	ISS
UniRef100_I1KKV7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KKV7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g26470

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma07g26470 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g170200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g26470

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g26470

Limit To All Plant Sequences

>Glyma07g26470.2   sequence type=transcript   gene model=Glyma07g26470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATATATATTTAAAGAGTGTAGTGGTCTTTAAATAAATCAATAATCGAGCATGATCGATTAGGCGTGCAAAGGGCATCTGTCATTTCGTTCACTCCATAGAATTGCAGTCAGGAACACACTACACAACTAAGAATCACACCACACTCTGACCTCAACGTTTTCAACAACCATTTCTCTTCCCATCAACGGTTCAACGCATCACTGCACAATCACTTCCTTCTTCAAATACTTCTCCTCTCATCTTTTGTCTCCTTTCTCTTCAATCACCGTTTTCCCAAAACAATTCTCTTCTCTTCTAATTCTCATCACGCAACCGCGTAACTAAAATCTCCGTTTCCGTTCAATTCCTTCATAACTCTCCTCCACTTTTTATTATTATCATTATCATTATTTAATTATTTATTAATAATAGTAGTAATAATTTCATTCCCCTCTTTGCTTCGAGTTTAATCAAAATTTCAATCATGCAGCGCTCTCACTCTCTCTCTCTCTAGAGAGCTCGGCCTGCCATGTCATCACAAACAGCCGCCTCCATGGAGGCGCCGGAGTCCCACGCGCCGCTGCTCCGCCCCCTCACCGATGCCAGCCGAGCCCCCGTCCCCACGCTCGCGCTCCTCCTCGGTCGCGCCGGCCGTCGCGGTCCCTCCATGCTGGTGCGGGAGACGGCAGCGCGTGAGCTTGAGGAGCGCCGGGCCGACTGGGGTTACTCCAAGCCGGTGGTGGCGCTTGACATGTCGTGGAACATGGCCTTCGTCGTCGTCACGGCGGTGATGCTCGCATGCACTACCGCCGAGCGCCCGAACACGCCGATCCGCGTGTGGATCGTTGGCTACGCGCTGCAGTGCCTCGTGCACGTGTTGCTCGTGTGGCTCGAATACCGTCGCCGGAGCCGGAGGGACTCGCACCACGGCCAGAGAGCGCGGGACGTGGAGAGCGACGCCGGCAGCGGTGACGAAGACTACAGTGACGACAGAGATTGGAGCTCTGGCTACTCGTCTCGCTCCCGCTTCACAAAACGATGTGAGTTGTTAAATACTGGGGTTTCATTCCTTTGGTGGATAGTGGGCTTTTATTGGGTTGTCTCTGGTGGCAATATACTTCTGCAAGATGCCCCACGATTGTACTGGTTGGTTGTTGTCTTTCTGGCATTTGATGTCTTTTTTGCCATCTTCTGTGTTGTCTTGGCTTGCTTGATTGGCATTGCTCTCTGTTGTTGTTTGCCCTGCATCATTGCTATTCTCTATGCTGTTGCAGGACAGGAAGGTGCATCAGAAGCAGATCTTAGCATGCTTCCAAAATACAGATTTAGAATATTAAGCGATGAGGATAAGCCTAGTGGTGGAGCTGGATCTATGGTTCCCATAGAAACCAGCAGCGCTTACTTGGCAAATGAACGAACACTTCTACCTGAGGATGCGGAGGGGAGAAAAGAAGTGTAGACATTGACGCTTATTAAAGATGAAGTCACCAAGCAAATAATAAAATGAAAGATTTTGCTAAGGAGGCTCTTATTAGGTGCTGCGTATTTGCGTAGATGGTTTTGATGAAGATTTTGCTAAACTATTCTTGAAAGAGGAACCTAGTTGAAAATGTATGCAGGCCTGAGCTCTTCTAGGATGTTGCTTTGTGGTCTTAATTCAATTATTATGATTTTTCATTTAATGCAAGATTCGAGCTTGTATATGTTTCTCTATAATAAATTGTCTCAATTACCAAAAAACCACTTAGATTAGAACACTTCATTTGTGGACTATAAAAACAGGCTGCTACAATTCAGCTTTCGATTTTCAGGAGTCTATTTTATTATTATCCGCTGATGGTTGCATTTCAGGAATGTTGTATATGCCTTTGTTCATATGAGGATGGAGCAGAGCTGCATGCTCTTCCCTGCAATCATCATTTCCATTCTTCATGCATTGTGAAATGGCTGAAGATGAATGCAACTTGTCCTCTCTGCAAGTACAATATTCTAAAGGGAAACGAACAAGTGTGACAGAAAAGTGAAGAACATACCAAGTACCAACTGGGTGTTTCAACAACTGTTCTGTAATATGTATATATAATTTCAAGACAAGAAGGTAAAGTTTACCTCCGTACTCGTTGGGTTTTGATCGTTGTTTCGTTTAGCGGTTTCTGTAGAGAAAAGATATATAGAGCATTTATTGGTGAATAAGTTAGCAACTGTAGTATGCTTAAGCATTATTTCGTCCTTTTTAGATTCAGAGTTGTCCAATTTATGGATTGTTCATTACTTTTCTGACGGAAACTAGATTGTTTCATTTGCTGCTGTTGAGTAATCACAGGTTTAATTCATTTGATTGTGTTAAATTTATGGACTATGGTATGAACTTTCTTATTTTATGTAAAGATGTGAGTTTCTTGATTACGCTATGAAAACTACAGAGAATG

Coding sequences of Glyma07g26470

Limit To All Plant Sequences

>Glyma07g26470.1   sequence type=CDS   gene model=Glyma07g26470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCATCACAAACAGCCGCCTCCATGGAGGCGCCGGAGTCCCACGCGCCGCTGCTCCGCCCCCTCACCGATGCCAGCCGAGCCCCCGTCCCCACGCTCGCGCTCCTCCTCGGTCGCGCCGGCCGTCGCGGTCCCTCCATGCTGGTGCGGGAGACGGCAGCGCGTGAGCTTGAGGAGCGCCGGGCCGACTGGGGTTACTCCAAGCCGGTGGTGGCGCTTGACATGTCGTGGAACATGGCCTTCGTCGTCGTCACGGCGGTGATGCTCGCATGCACTACCGCCGAGCGCCCGAACACGCCGATCCGCGTGTGGATCGTTGGCTACGCGCTGCAGTGCCTCGTGCACGTGTTGCTCGTGTGGCTCGAATACCGTCGCCGGAGCCGGAGGGACTCGCACCACGGCCAGAGAGCGCGGGACGTGGAGAGCGACGCCGGCAGCGGTGACGAAGACTACAGTGACGACAGAGATTGGAGCTCTGGCTACTCGTCTCGCTCCCGCTTCACAAAACGATGTGAGTTGTTAAATACTGGGGTTTCATTCCTTTGGTGGATAGTGGGCTTTTATTGGGTTGTCTCTGGTGGCAATATACTTCTGCAAGATGCCCCACGATTGTACTGGTTGGTTGTTGTCTTTCTGGCATTTGATGTCTTTTTTGCCATCTTCTGTGTTGTCTTGGCTTGCTTGATTGGCATTGCTCTCTGTTGTTGTTTGCCCTGCATCATTGCTATTCTCTATGCTGTTGCAGGACAGGAAGGTGCATCAGAAGCAGATCTTAGCATGCTTCCAAAATACAGATTTAGAATATTAAGCGATGAGGATAAGCCTAGTGGTGGAGCTGGATCTATGGTTCCCATAGAAACCAGCAGCGCTTACTTGGCAAATGAACGAACACTTCTACCTGAGGATGCGGAATGTTGTATATGCCTTTGTTCATATGAGGATGGAGCAGAGCTGCATGCTCTTCCCTGCAATCATCATTTCCATTCTTCATGCATTGTGAAATGGCTGAAGATGAATGCAACTTGTCCTCTCTGCAAGTACAATATTCTAAAGGGAAACGAACAAGTGTGA

>Glyma07g26470.2   sequence type=CDS   gene model=Glyma07g26470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCATCACAAACAGCCGCCTCCATGGAGGCGCCGGAGTCCCACGCGCCGCTGCTCCGCCCCCTCACCGATGCCAGCCGAGCCCCCGTCCCCACGCTCGCGCTCCTCCTCGGTCGCGCCGGCCGTCGCGGTCCCTCCATGCTGGTGCGGGAGACGGCAGCGCGTGAGCTTGAGGAGCGCCGGGCCGACTGGGGTTACTCCAAGCCGGTGGTGGCGCTTGACATGTCGTGGAACATGGCCTTCGTCGTCGTCACGGCGGTGATGCTCGCATGCACTACCGCCGAGCGCCCGAACACGCCGATCCGCGTGTGGATCGTTGGCTACGCGCTGCAGTGCCTCGTGCACGTGTTGCTCGTGTGGCTCGAATACCGTCGCCGGAGCCGGAGGGACTCGCACCACGGCCAGAGAGCGCGGGACGTGGAGAGCGACGCCGGCAGCGGTGACGAAGACTACAGTGACGACAGAGATTGGAGCTCTGGCTACTCGTCTCGCTCCCGCTTCACAAAACGATGTGAGTTGTTAAATACTGGGGTTTCATTCCTTTGGTGGATAGTGGGCTTTTATTGGGTTGTCTCTGGTGGCAATATACTTCTGCAAGATGCCCCACGATTGTACTGGTTGGTTGTTGTCTTTCTGGCATTTGATGTCTTTTTTGCCATCTTCTGTGTTGTCTTGGCTTGCTTGATTGGCATTGCTCTCTGTTGTTGTTTGCCCTGCATCATTGCTATTCTCTATGCTGTTGCAGGACAGGAAGGTGCATCAGAAGCAGATCTTAGCATGCTTCCAAAATACAGATTTAGAATATTAAGCGATGAGGATAAGCCTAGTGGTGGAGCTGGATCTATGGTTCCCATAGAAACCAGCAGCGCTTACTTGGCAAATGAACGAACACTTCTACCTGAGGATGCGGAGGGGAGAAAAGAAGTGTAG

Predicted protein sequences of Glyma07g26470

Limit To All Plant Sequences

>Glyma07g26470.1   sequence type=predicted peptide   gene model=Glyma07g26470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSQTAASMEAPESHAPLLRPLTDASRAPVPTLALLLGRAGRRGPSMLVRETAARELEERRADWGYSKPVVALDMSWNMAFVVVTAVMLACTTAERPNTPIRVWIVGYALQCLVHVLLVWLEYRRRSRRDSHHGQRARDVESDAGSGDEDYSDDRDWSSGYSSRSRFTKRCELLNTGVSFLWWIVGFYWVVSGGNILLQDAPRLYWLVVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSMLPKYRFRILSDEDKPSGGAGSMVPIETSSAYLANERTLLPEDAECCICLCSYEDGAELHALPCNHHFHSSCIVKWLKMNATCPLCKYNILKGNEQV*

>Glyma07g26470.2   sequence type=predicted peptide   gene model=Glyma07g26470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSQTAASMEAPESHAPLLRPLTDASRAPVPTLALLLGRAGRRGPSMLVRETAARELEERRADWGYSKPVVALDMSWNMAFVVVTAVMLACTTAERPNTPIRVWIVGYALQCLVHVLLVWLEYRRRSRRDSHHGQRARDVESDAGSGDEDYSDDRDWSSGYSSRSRFTKRCELLNTGVSFLWWIVGFYWVVSGGNILLQDAPRLYWLVVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSMLPKYRFRILSDEDKPSGGAGSMVPIETSSAYLANERTLLPEDAEGRKEV*

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