Glyma07g24950 - SoyBase

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Report for Sequence Feature Glyma07g24950

Feature Type:	gene_model
Chromosome:	Gm07
Start:	27387489
stop:	27395814
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g24950

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G23260	AT	Annotation by Michelle Graham. TAIR10: MMS ZWEI homologue 1 \| chr1:8257209-8258573 REVERSE LENGTH=158	SoyBase	E_val: 5.00E-91	ISS
GO:0006301	GO-bp	Annotation by Michelle Graham. GO Biological Process: postreplication repair	SoyBase	N/A	ISS
GO:0006623	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0031372	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: UBC13-MMS2 complex	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0016881	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acid-amino acid ligase activity	SoyBase	N/A	ISS
KOG0896	KOG	Ubiquitin-conjugating enzyme E2	JGI		ISS
PTHR24067	Panther	UBIQUITIN-CONJUGATING ENZYME E2	JGI		ISS
PTHR24067:SF8	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00179	PFAM	Ubiquitin-conjugating enzyme	JGI		ISS
UniRef100_C6SZD1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SZD1_SOYBN	SoyBase	E_val: 5.00E-114	ISS
UniRef100_Q45W76	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin-conjugating enzyme 2 n=1 Tax=Arachis hypogaea RepID=Q45W76_ARAHY	SoyBase	E_val: 2.00E-105	ISS

Expression Patterns of Glyma07g24950

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g24950 not represented in the dataset	Glyma07g24950 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma07g24950 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g168100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g24950

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g24950

Limit To All Plant Sequences

>Glyma07g24950.2   sequence type=transcript   gene model=Glyma07g24950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTACAAATGTTTTCCATCTACACAGTAGTTGGAGTACAACTAACTGCACCATCACCAGATAAAACTTGGGTGGTGCCTTTTTTCTTTTTCTTTCTCTCTATCGATTCTCGTAACAAACCCTACCCTTTTGAGTCTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAATTGGGGATGGAACTGTTAGCTATGGAATGGATGATGCTGATGACATATACATGCAATCTTGGACTGGGACTATCATCGGTCCCCCTAGTACTGTTCATGAAGGGCGTATCTACCAGTTGAAATTGTTTTGCAGCAGGGATTATCCAGACAATCCTCCATCTGTTAGATTTCAAACAAGGATTAACATGACATGTGTCAATCAAGAAACTGGAGTGGTTGAGCCACATTTGTTTCCTATGCTTGCTAATTGGAAACGTGAGCGTACAATGGAAGACATTTTGATTCAATTGAAGAGAGAAATGATGTCTCCCCAAAATAGGAAGCTAACTCAGCCTCCTGAAGGTAAAACAGAAAACACTGATAATATGGGGTGAAAACGACCGCATCATCAGCAATAAGTTTGCAGTGGTTAGTTACTTTGTGACACTTTTTATAACATGTTACTTGACATGCTGGAAAGTCATGATCAAGAAGCATAATTCTCTCTTACTTTGTTTCACTTTATTGGACTGCTATAGGGAACAATATTCCATGCTAATATTATAACTGATGTTTATACTTTTGAAACTTTGTAGCGATTCCATTGTGAATTACCTAATGCAATTAAACACCAAATACCAAATTGAAATAAGTGTATTTGAAATACTATTCAATGATTTCTCCAAATAAGTTGTAAAAATTGAAAACC

>Glyma07g24950.3   sequence type=transcript   gene model=Glyma07g24950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACAGTAGTTGGAGTACAACTAACTGCACCATCACCAGATAAAACTTGGGTGGTGCCTTTTTTCTTTTTCTTTCTCTCTATCGATTCTCGTAACAAACCCTACCCTTTTGAGTCTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAATTGGGGATGGAACTGTTAGCTATGGAATGGATGATGCTGATGACATATACATGCAATCTTGGACTGGGACTATCATCGGTCCCCCTAGTCAGGGATTATCCAGACAATCCTCCATCTGTTAGATTTCAAACAAGGATTAACATGACATGTGTCAATCAAGAAACTGGAGTGGTTGAGCCACATTTGTTTCCTATGCTTGCTAATTGGAAACGTGAGCGTACAATGGAAGACATTTTGATTCAATTGAAGAGAGAAATGATGTCTCCCCAAAATAGGAAGCTAACTCAGCCTCCTGAAGGCAATGAAGAATCCAGGGTTGATCAAAAGGGGTTGGTGGTGAGATGTTGTATTGTGTAATTCCGTGGAGAATCCAAGAATAATAATAATGTAAATAACTATATTCAATAGACCACTTCCTCCCTGGAGCAATCCAAGATATAGTAGTTACTATCATGTCTTGTGAAATTTTTATTGTACTGAGGCTGTTTTTACAGCGGATTCTAATTTCGAATTTTAAGATCCTTTTTAACTATCCTTTTGTGTGAACCCATGTCATGTGTATACTTGTGTCTGAAAATTGTGGGATAACATTTGACTTGTCATCAAATTGTTTTTCCTTTGGTACTTAATTTCAATGGTGGGCTGAACATTTAGT

>Glyma07g24950.4   sequence type=transcript   gene model=Glyma07g24950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTACAAATGTTTTCCATCTACACAGTAGTTGGAGTACAACTAACTGCACCATCACCAGATAAAACTTGGGTGGTGCCTTTTTTCTTTTTCTTTCTCTCTATCGATTCTCGTAACAAACCCTACCCTTTTGAGTCTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAATTGGGGATGGAACTGTTAGCTATGGAATGGATGATGCTGATGACATATACATGCAATCTTGGACTGGGACTATCATCGGTCCCCCTAGTACTGTTCATGAAGGGCGTATCTACCAGTTGAAATTGTTTTGCAGCAGGGATTATCCAGACAATCCTCCATCTGTTAGATTTCAAACAAGGATTAACATGACATGTGTCAATCAAGAAACTGGAGTGGTTGAGCCACATTTGTTTCCTATGCTTGCTAATTGGAAACGTGAGCGTACAATGGAAGACATTTTGATTCAATTGAAGAGAGAAATGATGTCTCCCCAAAATAGGAAGCTAACTCAGCCTCCTGAAGGCAATGAAGAATCCAGGGTTGATCAAAAGGGGTTGGTGGTGAGATGTTGTATTGTGTAATTCCGTGGAGAATCCAAGAATAATAATAATGTAAAACAGAAAACACTGATAATATGGGGTGAAAACGACCGCATCATCAGCAATAAGTTTGCAGTGGTTAGTTACTTTGTGACACTTTTTATAACATGTTACTTGACATGCTGGAAAGTCATGATCAAGAAGCATAATTCTCTCTTACTTTGTTTCACTTTATTGGACTGCTATAGGGAACAATATTCCATGCTAATATTATAACTGATGTTTATACTTTTGAAACTTTGTAGCGATTCCATTGTGAATTACCTAATGCAATTAAACACCAAATACCAAATTGAAATAAGTGTATTTGAAATACTATTCAATGATTTCTCCAAATAAGTTGTAAAAATTGAAAACC

>Glyma07g24950.5   sequence type=transcript   gene model=Glyma07g24950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACACAGTAGTTGGAGTACAACTAACTGCACCATCACCAGATAAAACTTGGGTGGTGCCTTTTTTCTTTTTCTTTCTCTCTATCGATTCTCGTAACAAACCCTACCCTTTTGAGTCTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAATTGGGGATGGAACTGTTAGCTATGGAATGGATGATGCTGATGACATATACATGCAATCTTGGACTGGGACTATCATCGGTCCCCCTAGTTTGAAATTGTTTTGCAGCAGGGATTATCCAGACAATCCTCCATCTGTTAGATTTCAAACAAGGATTAACATGACATGTGTCAATCAAGAAACTGGAGTGGTTGAGCCACATTTGTTTCCTATGCTTGCTAATTGGAAACGTGAGCGTACAATGGAAGACATTTTGATTCAATTGAAGAGAGAAATGATGTCTCCCCAAAATAGGAAGCTAACTCAGCCTCCTGAAGGCAATGAAGAATCCAGGGTTGATCAAAAGGGGTTGGTGGTGAGATGTTGTATTGTGTAATTCCGTGGAGAATCCAAGAATAATAATAATGTAAATAACTATATTCAATAGACCACTTCCTCCCTGGAGCAATCCAAGATATAGTAGTTACTATCATGTCTTGTGAAATTTTTATTGTACTGAGGCTGTTTTTACAGCGGATTCTAATTTCGAATTTTAAGATCCTTTTTAACTATCCTTTTGTGTGAACCCATGTCATGTGTATACTTGTGTCTGAAAATTGTGGGATAACATTTGACTTGTCATCAAATTGTTTTTCCTTTGGTACTTAATTTCAATGGTGGGCTGAACATTTAGTT

Coding sequences of Glyma07g24950

Limit To All Plant Sequences

>Glyma07g24950.1   sequence type=CDS   gene model=Glyma07g24950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTCCGAAGGATCCAGCGTCGTGGTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAATTGGGGATGGAACTGTTAGCTATGGAATGGATGATGCTGATGACATATACATGCAATCTTGGACTGGGACTATCATCGGTCCCCCTAGTACTGTTCATGAAGGGCGTATCTACCAGTTGAAATTGTTTTGCAGCAGGGATTATCCAGACAATCCTCCATCTGTTAGATTTCAAACAAGGATTAACATGACATGTGTCAATCAAGAAACTGGAGTGGTTGAGCCACATTTGTTTCCTATGCTTGCTAATTGGAAACGTGAGCGTACAATGGAAGACATTTTGATTCAATTGAAGAGAGAAATGATGTCTCCCCAAAATAGGAAGCTAACTCAGCCTCCTGAAGGCAATGAAGAATCCAGGGTTGATCAAAAGGGGTTGGTGGTGAGATGTTGTATTGTGTAA

>Glyma07g24950.2   sequence type=CDS   gene model=Glyma07g24950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTCCGAAGGATCCAGCGTCGTGGTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAATTGGGGATGGAACTGTTAGCTATGGAATGGATGATGCTGATGACATATACATGCAATCTTGGACTGGGACTATCATCGGTCCCCCTAGTACTGTTCATGAAGGGCGTATCTACCAGTTGAAATTGTTTTGCAGCAGGGATTATCCAGACAATCCTCCATCTGTTAGATTTCAAACAAGGATTAACATGACATGTGTCAATCAAGAAACTGGAGTGGTTGAGCCACATTTGTTTCCTATGCTTGCTAATTGGAAACGTGAGCGTACAATGGAAGACATTTTGATTCAATTGAAGAGAGAAATGATGTCTCCCCAAAATAGGAAGCTAACTCAGCCTCCTGAAGGTAAAACAGAAAACACTGATAATATGGGGTGA

>Glyma07g24950.3   sequence type=CDS   gene model=Glyma07g24950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACTGTTAGCTATGGAATGGATGATGCTGATGACATATACATGCAATCTTGGACTGGGACTATCATCGGTCCCCCTAGTCAGGGATTATCCAGACAATCCTCCATCTGTTAGATTTCAAACAAGGATTAACATGACATGTGTCAATCAAGAAACTGGAGTGGTTGAGCCACATTTGTTTCCTATGCTTGCTAATTGGAAACGTGAGCGTACAATGGAAGACATTTTGATTCAATTGAAGAGAGAAATGATGTCTCCCCAAAATAGGAAGCTAACTCAGCCTCCTGAAGGCAATGAAGAATCCAGGGTTGATCAAAAGGGGTTGGTGGTGAGATGTTGTATTGTGTAA

>Glyma07g24950.4   sequence type=CDS   gene model=Glyma07g24950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTCCGAAGGATCCAGCGTCGTGGTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAATTGGGGATGGAACTGTTAGCTATGGAATGGATGATGCTGATGACATATACATGCAATCTTGGACTGGGACTATCATCGGTCCCCCTAGTACTGTTCATGAAGGGCGTATCTACCAGTTGAAATTGTTTTGCAGCAGGGATTATCCAGACAATCCTCCATCTGTTAGATTTCAAACAAGGATTAACATGACATGTGTCAATCAAGAAACTGGAGTGGTTGAGCCACATTTGTTTCCTATGCTTGCTAATTGGAAACGTGAGCGTACAATGGAAGACATTTTGATTCAATTGAAGAGAGAAATGATGTCTCCCCAAAATAGGAAGCTAACTCAGCCTCCTGAAGGCAATGAAGAATCCAGGGTTGATCAAAAGGGGTTGGTGGTGAGATGTTGTATTGTGTAA

>Glyma07g24950.5   sequence type=CDS   gene model=Glyma07g24950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTCCGAAGGATCCAGCGTCGTGGTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAATTGGGGATGGAACTGTTAGCTATGGAATGGATGATGCTGATGACATATACATGCAATCTTGGACTGGGACTATCATCGGTCCCCCTAGTTTGAAATTGTTTTGCAGCAGGGATTATCCAGACAATCCTCCATCTGTTAGATTTCAAACAAGGATTAACATGACATGTGTCAATCAAGAAACTGGAGTGGTTGAGCCACATTTGTTTCCTATGCTTGCTAATTGGAAACGTGAGCGTACAATGGAAGACATTTTGATTCAATTGAAGAGAGAAATGATGTCTCCCCAAAATAGGAAGCTAACTCAGCCTCCTGAAGGCAATGAAGAATCCAGGGTTGATCAAAAGGGGTTGGTGGTGAGATGTTGTATTGTGTAA

Predicted protein sequences of Glyma07g24950

Limit To All Plant Sequences

>Glyma07g24950.1   sequence type=predicted peptide   gene model=Glyma07g24950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSEGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMQSWTGTIIGPPSTVHEGRIYQLKLFCSRDYPDNPPSVRFQTRINMTCVNQETGVVEPHLFPMLANWKRERTMEDILIQLKREMMSPQNRKLTQPPEGNEESRVDQKGLVVRCCIV*

>Glyma07g24950.2   sequence type=predicted peptide   gene model=Glyma07g24950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSEGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMQSWTGTIIGPPSTVHEGRIYQLKLFCSRDYPDNPPSVRFQTRINMTCVNQETGVVEPHLFPMLANWKRERTMEDILIQLKREMMSPQNRKLTQPPEGKTENTDNMG*

>Glyma07g24950.3   sequence type=predicted peptide   gene model=Glyma07g24950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MELLAMEWMMLMTYTCNLGLGLSSVPLVRDYPDNPPSVRFQTRINMTCVNQETGVVEPHLFPMLANWKRERTMEDILIQLKREMMSPQNRKLTQPPEGNEESRVDQKGLVVRCCIV*

>Glyma07g24950.4   sequence type=predicted peptide   gene model=Glyma07g24950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSEGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMQSWTGTIIGPPSTVHEGRIYQLKLFCSRDYPDNPPSVRFQTRINMTCVNQETGVVEPHLFPMLANWKRERTMEDILIQLKREMMSPQNRKLTQPPEGNEESRVDQKGLVVRCCIV*

>Glyma07g24950.5   sequence type=predicted peptide   gene model=Glyma07g24950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSEGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMQSWTGTIIGPPSLKLFCSRDYPDNPPSVRFQTRINMTCVNQETGVVEPHLFPMLANWKRERTMEDILIQLKREMMSPQNRKLTQPPEGNEESRVDQKGLVVRCCIV*

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