Glyma07g24496 - SoyBase

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Report for Sequence Feature Glyma07g24496

Feature Type:	gene_model
Chromosome:	Gm07
Start:	26963519
stop:	26970889
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g24496

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G26320	AT	Annotation by Michelle Graham. TAIR10: Zinc-binding dehydrogenase family protein \| chr1:9105240-9107029 FORWARD LENGTH=346	SoyBase	E_val: 1.00E-21	ISS
GO:0006979	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to oxidative stress	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
PTHR11695	Panther	ALCOHOL DEHYDROGENASE RELATED	JGI		ISS
PTHR11695:SF5	Panther	BENZYLALCOHOL DEHYDROGENASE	JGI		ISS
UniRef100_G7K4J3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: (+)-pulegone reductase n=1 Tax=Medicago truncatula RepID=G7K4J3_MEDTR	SoyBase	E_val: 2.00E-28	ISS
UniRef100_UPI00023391C2	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023391C2 related cluster n=1 Tax=unknown RepID=UPI00023391C2	SoyBase	E_val: 1.00E-51	ISS

Expression Patterns of Glyma07g24496

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g24496 not represented in the dataset	Glyma07g24496 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma07g24496 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g167300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g24496

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g24496

Limit To All Plant Sequences

>Glyma07g24496.1   sequence type=CDS   gene model=Glyma07g24496   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATCATACTGTGAATATCATATACAAGCAGATCAAAGTAGAAGCCTTCACAGTGTATGATTACTATCACCTCTATCCTAAATTCTTGGATATTGTTTTGCCTTATATTAGGGAAGGGAAGATAACATACGTTGAAGACATAGCTAAGGGTCTTAAGAACGATCCAGCTACACCAGAAGCAATGTTCAAAGGCCGTAGTGCTGGCAAACAAGAACGGTCCCAGAGAACTGTTGAAAGAGTTCATCTTCTGAAAGTCCTAGAGACACGTAAGTCAGCATTGCAGAAAAGCAAGGCATGGCATTTGCTCGTGCTGTTACTGCTGGTTTTGAAATTGACTATATATCGCCTTTGA

Predicted protein sequences of Glyma07g24496

Limit To All Plant Sequences

>Glyma07g24496.1   sequence type=predicted peptide   gene model=Glyma07g24496   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNHTVNIIYKQIKVEAFTVYDYYHLYPKFLDIVLPYIREGKITYVEDIAKGLKNDPATPEAMFKGRSAGKQERSQRTVERVHLLKVLETRKSALQKSKAWHLLVLLLLVLKLTIYRL*

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