Glyma07g23544 - SoyBase

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Report for Sequence Feature Glyma07g23544

Feature Type:	gene_model
Chromosome:	Gm07
Start:	25534167
stop:	25567172
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g23544

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G10690	AT	Annotation by Michelle Graham. TAIR10: DNA GYRASE A \| chr3:3339612-3346243 REVERSE LENGTH=950	SoyBase	E_val: 0	ISS
GO:0006200	GO-bp	Annotation by Michelle Graham. GO Biological Process: ATP catabolic process	SoyBase	N/A	ISS
GO:0006259	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA metabolic process	SoyBase	N/A	ISS
GO:0006261	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication	SoyBase	N/A	ISS
GO:0006265	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA topological change	SoyBase	N/A	ISS
GO:0007059	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromosome segregation	SoyBase	N/A	ISS
GO:0009220	GO-bp	Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009295	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleoid	SoyBase	N/A	ISS
GO:0009330	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: DNA topoisomerase complex (ATP-hydrolyzing)	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016592	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mediator complex	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0003916	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA topoisomerase activity	SoyBase	N/A	ISS
GO:0003918	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA topoisomerase type II (ATP-hydrolyzing) activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0008094	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA-dependent ATPase activity	SoyBase	N/A	ISS
PTHR10169	Panther	DNA TOPOISOMERASE/GYRASE	JGI		ISS
PTHR10169:SF4	Panther	DNA TOPOISOMERASE II	JGI		ISS
PF00521	PFAM	DNA gyrase/topoisomerase IV, subunit A	JGI		ISS
PF03989	PFAM	DNA gyrase C-terminal domain, beta-propeller	JGI		ISS
UniRef100_G7I9Z9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA gyrase subunit A n=1 Tax=Medicago truncatula RepID=G7I9Z9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002338156	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338156 related cluster n=1 Tax=unknown RepID=UPI0002338156	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g23544

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g23544 not represented in the dataset	Glyma07g23544 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma07g23544 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g166000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g23544

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g23544

Limit To All Plant Sequences

>Glyma07g23544.1   sequence type=CDS   gene model=Glyma07g23544   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGTTTAGATGGGATAAGTGATATTCGGGATGAGAGTGATCGTTCTGGAATGCGTATAGTCATTGAGCTGAAGCGGGGATCAGATCCATTGATTGTTTTGAATAATCTTTATCGCTTAACATCTCTGCAATCTACATTTAGCTATAATATGGTGGGCATTCTAAATGGACAACCTAAACAAATGGGGCTGAAGGAATTACTGCAGGCATTCTTAGACTTCAGATGCTCTGTTGTTGAGAGACGTGCAAGGTTTAAGTTATCACAAGCACAAGAGAGAAGACATATTGTTGAGGTATGTGTTCTTATTGGGTTTGATAATCTGGATGGGGTGATTCGCATAATACGTGAAGCTTCAAGTAACTCGGCTGCAGCAGCTGGTTTACGTAATGCATTCAGTCTCTCTGAGAAACAAGCTGAAGCTCTTTTGGACATTAGCCTAAGAAGACTGTCCCTTCGTGAGAGTGGAAACTTTATGGCTGAACGTAAATCTTTGATGGAACAAATTTCCAAGTTAGAGGAACTGTTGTCCAGCAGGAAAAATATACTTGAGCTTATAGAACAAGAAGCAATTGAAATGAAGAATAAGTTTTCCAATCCAAGACCTTCAATGTTGGAGGACACAGATGATGGTCAACTTGAGGACATTGATGTTATTCCAAATGAAGAGATGATATTGGCACTTAGTGAAAAAGGTTATGTGAAACGGATGAAGCCAAACACTTTTAACCTACAAAATCGTGGAACAATTGGAAAATCTGTAGGAAAATTAAAAGTGAATGATTCGATGTCTGATTTTCTCGTTTTTCGTGCACATGATCATGTCCTATATTTCAGTGATAAGGGAACAGTATACTCAGCTCGTGCCTACAAAATTCCTGAATGTAGCCGCACTGCTGCTGGTACACCACTTGTTCAGATCTTATCTTTATCTGATGGTGAAAGAATTACATCTATTATTCCTGTGAGTGAGTTTGCTGAGGATCAGTTTTTGCTGATGCTTACTATGCAAGGTTATATCAAAAGAGTATCCTTGAATTTGTTTTCATCAATCAGGTCAATCGGAATCATCGCTATTCAATTGGTTCATGGTGATGAGCTGAAATGGGTCCGTCTTTGCTCAAATGATGACTTTGTGGCCATGGCTTCTCACAATGGAATGGTCATGCTAAGCCAATGCACTCAGATTCGCACACTAGGTAGAAATACGCGGGGGGCACTTGCAATGAGACTAAAAAAAGGGGATAAGATGGCAAGTGTCGACATTATACCATCAGCCATGTGGAACAACTTGGAAACCTCATCAAAATTTCCTGGGAGCAATGCAAAGAACCAAAATGGGCCATGGCTATTGTTTGTATCTGAGAATGGTTATGGAAAGAGAGTTCCTTTGTGCAGTTTCCGGATATCGTCTTTGAATCGAGTTGGTTTGATAGGATATAAGTTTTCTGCTGAGGATCGCTTGGCTGCTGTTTTTGTGAATGGTGAAAGTGATGAACAAGTGGTTCTTATAAGCCAAAGTGGCACTGTCAACAGAATTAAGGTTCGGGATATTTCAATACAATCTCGATTTGCAAGGGAAGTTATTTTGATGCGACTTGATCATTCTGGAAAGATTCAGTCTGCTTCATTGATCTCAGCAACAGATTGTGAGCCTGAGGAAGTTCTTACTATTGCACAAGGCTAG

Predicted protein sequences of Glyma07g23544

Limit To All Plant Sequences

>Glyma07g23544.1   sequence type=predicted peptide   gene model=Glyma07g23544   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
SLDGISDIRDESDRSGMRIVIELKRGSDPLIVLNNLYRLTSLQSTFSYNMVGILNGQPKQMGLKELLQAFLDFRCSVVERRARFKLSQAQERRHIVEVCVLIGFDNLDGVIRIIREASSNSAAAAGLRNAFSLSEKQAEALLDISLRRLSLRESGNFMAERKSLMEQISKLEELLSSRKNILELIEQEAIEMKNKFSNPRPSMLEDTDDGQLEDIDVIPNEEMILALSEKGYVKRMKPNTFNLQNRGTIGKSVGKLKVNDSMSDFLVFRAHDHVLYFSDKGTVYSARAYKIPECSRTAAGTPLVQILSLSDGERITSIIPVSEFAEDQFLLMLTMQGYIKRVSLNLFSSIRSIGIIAIQLVHGDELKWVRLCSNDDFVAMASHNGMVMLSQCTQIRTLGRNTRGALAMRLKKGDKMASVDIIPSAMWNNLETSSKFPGSNAKNQNGPWLLFVSENGYGKRVPLCSFRISSLNRVGLIGYKFSAEDRLAAVFVNGESDEQVVLISQSGTVNRIKVRDISIQSRFAREVILMRLDHSGKIQSASLISATDCEPEEVLTIAQG*

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