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Integrating Genetics and Genomics to Advance Soybean Research


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Report for Sequence Feature Glyma07g22970

Feature Type:gene_model
Chromosome:Gm07
Start:24723641
stop:24724586
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma07g22970
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G23040AT Annotation by Michelle Graham. TAIR10: hydroxyproline-rich glycoprotein family protein | chr1:8165025-8165459 FORWARD LENGTH=144 SoyBaseE_val: 6.00E-10ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0031225GO-cc Annotation by Michelle Graham. GO Cellular Compartment: anchored to membrane SoyBaseN/AISS
GO:0045735GO-mf Annotation by Michelle Graham. GO Molecular Function: nutrient reservoir activity SoyBaseN/AISS
UniRef100_C6TFD9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TFD9_SOYBN SoyBaseE_val: 6.00E-99ISS

Expression Patterns of Glyma07g22970
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g22970 not represented in the dataset
Glyma07g22970 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma07g22970 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g165300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma07g22970
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma07g22970
>Glyma07g22970.1   sequence type=CDS   gene model=Glyma07g22970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCCACAAAATTAAGTCATCAAATTAAAGCACCGATGATCCTCAATTTGATCCTTGTGCTTATTTGTGTCACTACTCCAATCAAAGGTGAGAAATCAAGGAAGCTTGATGAGGTCACAAACGGTAATGAGAAGTGCACACCATGTGAAGGTGGTTACACCCCATCACCACCAATAGAGTATTTATCACCACCACCACCAATAGAGTATTTTTCACCGCCACCACCAATTGTGTATCCATCACCACCACCCCCTTCACCCAAGAAACCACCAACGAAGTATTGCCCTCCACCACCATCATCAGCATATTTGTACATGACGGGTCCACCGGGGAACTTGTATCCCGTTGATGAGAATTTTAGTGGAGCTAGTTCCAACCGCCACCATAGTTTCGCTGTTTTCTTGCCACTTTTAGTTGGCTTGTTGTGCATGATGGCCTTTTGGTGA
Predicted protein sequences of Glyma07g22970
>Glyma07g22970.1   sequence type=predicted peptide   gene model=Glyma07g22970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPTKLSHQIKAPMILNLILVLICVTTPIKGEKSRKLDEVTNGNEKCTPCEGGYTPSPPIEYLSPPPPIEYFSPPPPIVYPSPPPPSPKKPPTKYCPPPPSSAYLYMTGPPGNLYPVDENFSGASSNRHHSFAVFLPLLVGLLCMMAFW*






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