SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G23460 | AT | Annotation by Michelle Graham. TAIR10: extra-large G-protein 1 | chr2:9995699-9998945 FORWARD LENGTH=888 | SoyBase | E_val: 0 | ISS |
| GO:0006184 | GO-bp | Annotation by Michelle Graham. GO Biological Process: GTP catabolic process | SoyBase | N/A | ISS |
| GO:0007165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: signal transduction | SoyBase | N/A | ISS |
| GO:0007186 | GO-bp | Annotation by Michelle Graham. GO Biological Process: G-protein coupled receptor signaling pathway | SoyBase | N/A | ISS |
| GO:0007188 | GO-bp | Annotation by Michelle Graham. GO Biological Process: adenylate cyclase-modulating G-protein coupled receptor signaling pathway | SoyBase | N/A | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0009744 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus | SoyBase | N/A | ISS |
| GO:0009749 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to glucose stimulus | SoyBase | N/A | ISS |
| GO:0009750 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus | SoyBase | N/A | ISS |
| GO:0010555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to mannitol stimulus | SoyBase | N/A | ISS |
| GO:2000067 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of root morphogenesis | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005834 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: heterotrimeric G-protein complex | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0031234 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extrinsic to internal side of plasma membrane | SoyBase | N/A | ISS |
| GO:0001664 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: G-protein coupled receptor binding | SoyBase | N/A | ISS |
| GO:0003924 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTPase activity | SoyBase | N/A | ISS |
| GO:0004871 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: signal transducer activity | SoyBase | N/A | ISS |
| GO:0019001 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: guanyl nucleotide binding | SoyBase | N/A | ISS |
| GO:0031683 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: G-protein beta/gamma-subunit complex binding | SoyBase | N/A | ISS |
| KOG0082 | KOG | G-protein alpha subunit (small G protein superfamily) | JGI | ISS | |
| PTHR10218 | Panther | GTP-BINDING PROTEIN ALPHA SUBUNIT | JGI | ISS | |
| PTHR10218:SF90 | Panther | XLG (EXTRA-LARGE GTP-BINDING PROTEIN) | JGI | ISS | |
| PF00503 | PFAM | G-protein alpha subunit | JGI | ISS | |
| UniRef100_B9RZF5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: GTP-binding protein alpha subunit, gna, putative n=1 Tax=Ricinus communis RepID=B9RZF5_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002338AE8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002338AE8 related cluster n=1 Tax=unknown RepID=UPI0002338AE8 | SoyBase | E_val: 0 | ISS |
|
Glyma07g21110 not represented in the dataset |
Glyma07g21110 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g01070 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g163200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g21110.1 sequence type=CDS gene model=Glyma07g21110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCTCTTGTGAGAAAGTTAAGGCCTTCTTCTGTGCCTACTGTTACTGTGGAAACTGAAGATAGCTTAAGCAGCTATGAGTACTCCCTTGCTGTGGTGTATAATGGCCCTCCTCTCAGTTACTCCATTCCTGAAATCCCTGCTTTCAAAATTGACCAAATCCCAATTGCAACCATTGCTTCTCTCTCTCATGATGACGTCTCAGTCCCAGTTATCCAACCTCTTGGCAAAAGTCTTCACAAAAGGAAGCAGAATCACTGGGTGACAGATTCTGTTGTCCTTTCAAGCTTGGACTCTTGTGCAGTAGATTCACCACCAGCACCAGACGGTGTTGATGGTGATATGCACAAGAGTAGTCCAGACACTTTGGAATTTCCTGATGATAGAGATGGCACTTTTCTTCACACAACTTCTGACACCACAGAATCAGGTCCAGGTTCGGTTACAACCTCTCTATTTGCCCCTTCTGATGAGATTTGTTCCTTCAGAGAGGAAGAGCAAACACCAAGTCCAACTCCAAAGCATGTGAAGCGTGTTTCTGCGGTGACCTTCTGTGATCCTGAGTCAAACTACATGGTGGAGACAGATAGTGATGAGTTTGGTGACTCTCAGGTTGAGAGTGTTCCAGTGATGGAACGTGCTGTGAGGCCTGGGAAGAAGGGTTCTTGCTATAGGTGCCTCAAGGGGAACCGTCTTACGCCAAAGGAGGTTTGCATTGTTTGTAGTGCAAAGTATTGTCGCAGCTGTGTGGTGAGGGCTATGGGGTCCATGCCAGAGGGAAGAAAATGTGTGACTTGCATTGGCTACAGAATTTATGAGAGAAATAGAAGCAAGCTGGGGAAGTGTTCTCGTATGATGAAATTGTTGCTGTCTGAGTTGACTGTGACTCAAGTCATGGATGATGAAAGGTCTTGTGAAGCAAATCAAATACCACCGGAGCTTGTTTGTGTCAACTTGCAACCTCTGAATAGGGAACAGCTTAAATTGCTCCTCAACTGTCGAAACCCACCAAAACAACTGAAGCCAGGATCCTATTGGTATGATAAAGCATCTGGATTTTGGGGAAAGGATGGCCAACCGCCTAGCCAGATAATCAGCCCCCAGCTTGATGTTGGGGGTCGCCTGCACAAAAATGCAAGCAATGGAAACACTAATGTGATTATAAATGATCGCGAGATTACGCAAAAAGAGCGATTGATACTGCAGTTGGCTGGAGTGCCGTGTGAGGGAACACCTAACTTTTGGGTGAATGCTGATGGATCATACAGGGAAGAGGGGCAGAGGAATGATAGGGGCTGTATATGGGATAAGCGTGTAGCAAGGTTGGCTTGTGCAATTTTGTCTTTGCCAGTCCCTTCAAAGTCTGTAGCTCTTTCTTGTGAAGGTGAAACAGCTAACACAGACAGCGTTCATCGAAAAATACTTCACAAATTTCTCCTTGTTGGTTCTGTCAATTCTGGTGCATGTACTATATTTAAACAGGCCAAGCTTCTGTATAATGATCCTTTCTCTGAAAATGAGCTCCAAAATATCAAGTCGGTGATCCAAAGTAACCTGTTTACCTACCTTGGTATACTGCTGGAGGGACGTGCACATTTCGAAGAAGAGAGTTTGTTGGAGAATAGGAAAAGAAGGTCTGTTGATGAATCTACATCATCAGGGAATATCGGCAGTGATGATGTTGAAACAACACTCTATTCCATTGGCTCACGATTGAAAGCTTTCTCAGATTGGCTACTCAAATACATGGTGTCAGGTAACCTGGATACAATATTTCCAGCTGCTACACGTGAATATGGACCAATGGTGGAGGGTTTGTGGAAGGATAAAGCCATTCAAGCAACATATGATAGGCGAAATGAACTAAAAATGCTACCCAGAAGTGCAAACTATTTTCTGGATCGTGCTGTTGAAATTTCCAAGACTGACTATGAGCCATCTGATACGGACATCTTGTACGCTGAGGGTATATCGTTATCCAACAGCCTCACTTCAATGGAATTTTGTTTTCCCAAGTCAAACAGTGAGGATTCTTTGTTTCCTGAGTATCAACATGAATCTTCTCTCAGATACCAACTGATCAGAGTACATCCTAAAAGCCTTGGAGAAAACTGCAAGTGGTTGGAGATGTTTGAAGAGACCGATGTTGTAATGTTCTCAGTTGCCTTATCTGACTATGATGAGTACACTACAGACAGTAAAGGAGTTTCTACCAACAAAATGTTGGTAGCTAAGAATCTCTTTGAAAACATAATTTCTCATCGAAGCTTCCATAACAAAAAATTTCTCCTAGTATTGACTAAATTTGATCTGCTTGAGGAGAAGATTGAACACATTCCTCTAGCACAATGTGAATGGTTTAGCGACTTCCAACCATTTATCAGTCCCAATCAGAAGAAAGGCTGTAGCAATGGCAATAATAACTCTTCATTAGCACAATGTGCTTTTCAATACATTGCTGTCAAGTTTAAGAGATTGTTCCTTTCCATCACTGGCCGAATTCTCTTTGTTTCACTGGTTAATGGATTGGAACCTGATACTATTGATGAAGCTCTCAGATATGGAAGGGAGGTTATGGAGTGGGAAAAATGGGATCCCTCTATTGTAACTGATCCAAAGTCCGAGAATACTTCAACAAGCATTGATGAGCAAAGTTACTTATGTTAA
>Glyma07g21110.1 sequence type=predicted peptide gene model=Glyma07g21110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASLVRKLRPSSVPTVTVETEDSLSSYEYSLAVVYNGPPLSYSIPEIPAFKIDQIPIATIASLSHDDVSVPVIQPLGKSLHKRKQNHWVTDSVVLSSLDSCAVDSPPAPDGVDGDMHKSSPDTLEFPDDRDGTFLHTTSDTTESGPGSVTTSLFAPSDEICSFREEEQTPSPTPKHVKRVSAVTFCDPESNYMVETDSDEFGDSQVESVPVMERAVRPGKKGSCYRCLKGNRLTPKEVCIVCSAKYCRSCVVRAMGSMPEGRKCVTCIGYRIYERNRSKLGKCSRMMKLLLSELTVTQVMDDERSCEANQIPPELVCVNLQPLNREQLKLLLNCRNPPKQLKPGSYWYDKASGFWGKDGQPPSQIISPQLDVGGRLHKNASNGNTNVIINDREITQKERLILQLAGVPCEGTPNFWVNADGSYREEGQRNDRGCIWDKRVARLACAILSLPVPSKSVALSCEGETANTDSVHRKILHKFLLVGSVNSGACTIFKQAKLLYNDPFSENELQNIKSVIQSNLFTYLGILLEGRAHFEEESLLENRKRRSVDESTSSGNIGSDDVETTLYSIGSRLKAFSDWLLKYMVSGNLDTIFPAATREYGPMVEGLWKDKAIQATYDRRNELKMLPRSANYFLDRAVEISKTDYEPSDTDILYAEGISLSNSLTSMEFCFPKSNSEDSLFPEYQHESSLRYQLIRVHPKSLGENCKWLEMFEETDVVMFSVALSDYDEYTTDSKGVSTNKMLVAKNLFENIISHRSFHNKKFLLVLTKFDLLEEKIEHIPLAQCEWFSDFQPFISPNQKKGCSNGNNNSSLAQCAFQYIAVKFKRLFLSITGRILFVSLVNGLEPDTIDEALRYGREVMEWEKWDPSIVTDPKSENTSTSIDEQSYLC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
