SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research


Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma07g21100): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma07g21100): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma07g21100

Feature Type:gene_model
Chromosome:Gm07
Start:21493259
stop:21498341
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma07g21100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G42650AT Annotation by Michelle Graham. TAIR10: allene oxide synthase | chr5:17097803-17099359 REVERSE LENGTH=518 SoyBaseE_val: 7.00E-167ISS
GO:0000096GO-bp Annotation by Michelle Graham. GO Biological Process: sulfur amino acid metabolic process SoyBaseN/AISS
GO:0000165GO-bp Annotation by Michelle Graham. GO Biological Process: MAPK cascade SoyBaseN/AISS
GO:0006546GO-bp Annotation by Michelle Graham. GO Biological Process: glycine catabolic process SoyBaseN/AISS
GO:0006569GO-bp Annotation by Michelle Graham. GO Biological Process: tryptophan catabolic process SoyBaseN/AISS
GO:0006612GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane SoyBaseN/AISS
GO:0006636GO-bp Annotation by Michelle Graham. GO Biological Process: unsaturated fatty acid biosynthetic process SoyBaseN/AISS
GO:0006733GO-bp Annotation by Michelle Graham. GO Biological Process: oxidoreduction coenzyme metabolic process SoyBaseN/AISS
GO:0006766GO-bp Annotation by Michelle Graham. GO Biological Process: vitamin metabolic process SoyBaseN/AISS
GO:0006952GO-bp Annotation by Michelle Graham. GO Biological Process: defense response SoyBaseN/AISS
GO:0008652GO-bp Annotation by Michelle Graham. GO Biological Process: cellular amino acid biosynthetic process SoyBaseN/AISS
GO:0009072GO-bp Annotation by Michelle Graham. GO Biological Process: aromatic amino acid family metabolic process SoyBaseN/AISS
GO:0009106GO-bp Annotation by Michelle Graham. GO Biological Process: lipoate metabolic process SoyBaseN/AISS
GO:0009108GO-bp Annotation by Michelle Graham. GO Biological Process: coenzyme biosynthetic process SoyBaseN/AISS
GO:0009117GO-bp Annotation by Michelle Graham. GO Biological Process: nucleotide metabolic process SoyBaseN/AISS
GO:0009416GO-bp Annotation by Michelle Graham. GO Biological Process: response to light stimulus SoyBaseN/AISS
GO:0009595GO-bp Annotation by Michelle Graham. GO Biological Process: detection of biotic stimulus SoyBaseN/AISS
GO:0009611GO-bp Annotation by Michelle Graham. GO Biological Process: response to wounding SoyBaseN/AISS
GO:0009620GO-bp Annotation by Michelle Graham. GO Biological Process: response to fungus SoyBaseN/AISS
GO:0009684GO-bp Annotation by Michelle Graham. GO Biological Process: indoleacetic acid biosynthetic process SoyBaseN/AISS
GO:0009694GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid metabolic process SoyBaseN/AISS
GO:0009695GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process SoyBaseN/AISS
GO:0009697GO-bp Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process SoyBaseN/AISS
GO:0009753GO-bp Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus SoyBaseN/AISS
GO:0009862GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway SoyBaseN/AISS
GO:0009867GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway SoyBaseN/AISS
GO:0010200GO-bp Annotation by Michelle Graham. GO Biological Process: response to chitin SoyBaseN/AISS
GO:0010310GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process SoyBaseN/AISS
GO:0010363GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response SoyBaseN/AISS
GO:0015994GO-bp Annotation by Michelle Graham. GO Biological Process: chlorophyll metabolic process SoyBaseN/AISS
GO:0019216GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of lipid metabolic process SoyBaseN/AISS
GO:0019288GO-bp Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway SoyBaseN/AISS
GO:0019373GO-bp Annotation by Michelle Graham. GO Biological Process: epoxygenase P450 pathway SoyBaseN/AISS
GO:0019748GO-bp Annotation by Michelle Graham. GO Biological Process: secondary metabolic process SoyBaseN/AISS
GO:0019761GO-bp Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process SoyBaseN/AISS
GO:0031348GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response SoyBaseN/AISS
GO:0031407GO-bp Annotation by Michelle Graham. GO Biological Process: oxylipin metabolic process SoyBaseN/AISS
GO:0031408GO-bp Annotation by Michelle Graham. GO Biological Process: oxylipin biosynthetic process SoyBaseN/AISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0043900GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of multi-organism process SoyBaseN/AISS
GO:0044272GO-bp Annotation by Michelle Graham. GO Biological Process: sulfur compound biosynthetic process SoyBaseN/AISS
GO:0050832GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to fungus SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009534GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid SoyBaseN/AISS
GO:0009535GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane SoyBaseN/AISS
GO:0009579GO-cc Annotation by Michelle Graham. GO Cellular Compartment: thylakoid SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0010287GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plastoglobule SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0005506GO-mf Annotation by Michelle Graham. GO Molecular Function: iron ion binding SoyBaseN/AISS
GO:0009055GO-mf Annotation by Michelle Graham. GO Molecular Function: electron carrier activity SoyBaseN/AISS
GO:0009978GO-mf Annotation by Michelle Graham. GO Molecular Function: allene oxide synthase activity SoyBaseN/AISS
GO:0016705GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen SoyBaseN/AISS
GO:0016836GO-mf Annotation by Michelle Graham. GO Molecular Function: hydro-lyase activity SoyBaseN/AISS
GO:0019825GO-mf Annotation by Michelle Graham. GO Molecular Function: oxygen binding SoyBaseN/AISS
GO:0020037GO-mf Annotation by Michelle Graham. GO Molecular Function: heme binding SoyBaseN/AISS
KOG0157 KOG Cytochrome P450 CYP4/CYP19/CYP26 subfamilies JGI ISS
PF00067PFAM Cytochrome P450 JGI ISS
UniRef100_Q2LAJ5UniRef Annotation by Michelle Graham. Best UniRef hit: Cytochrome P450 monooxygenase CYP74A1 n=2 Tax=Glycine max RepID=Q2LAJ5_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q2LAJ5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cytochrome P450 monooxygenase CYP74A1 n=2 Tax=Glycine max RepID=Q2LAJ5_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma07g21100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g21100 not represented in the dataset
Glyma07g21100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma07g21100 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g162900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma07g21100
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma07g21100
>Glyma07g21100.2   sequence type=transcript   gene model=Glyma07g21100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CACAGTGACTCGATCTGTAAGGCAGGGACCAACTCATCATCAATGATTTCACTTATAAAAAACAAAATAAACCACCTTGCTCCTCCAACACACCACTATTCTTCACTCCTCCTCCTCCCTCTCTCTTCCAAACACACATCCTCAACCATGGCAGCACCATCTTCAGAGACAAAGTCACCATCATCCTCGAACACGCAGCTTCCGCTGAAACCAATCCCAGGCAGCTACGGAATGCCGTTTTTTGGAGCAATAAGCGACAGACACAACTACTTCTACCACCAAGGACGCGACAAGTTCTTCGCGACGAGGATTGAAAAACACAACTCCACCGTGATCCGAACCAACATGCCTCCGGGGCCCTTCATCTCCTCGGACCCTCGTGTCGTCGCGTTGTTGGACGGTGCCTCCTTCCCGATCCTCTTCGACAACGACAAGGTCGAGAAGCTCAACGTTCTCGACGGCACCTTCATGCCTTCCACCAAGTTCACCGGCGGGTTCCGCGTCTGCGCCTACCTCGACACCACCGAACCCAACCACGCACTCATCAAACAGTTCTTCCTTAACGTCCTCGCCAAGCGAAAAGACTCTTTTGTCCCTCTGTTCCGAAACTGCCTCCAGGAGTCGTTCGCGGAGATTGAGGACCAGTTGAGTAAAAACACCAAAGCGGACTTCAACACTGTGTTCAGTGACGCTTCCTTCAACTTCATGTTCAGGTTGTTCTGTGATGGCAAAGACCCTTCGCAGACCAACCTCGGTTCTAAGGGACCGAAGCTCGTGGACACATGGCTTCTCTTTCAGCTGGCCCCACTGGCAACTCTAGGCCTCCCCAAAATCTTCAACTACATCGAAGACTTCCTAATCCGCACACTCCCTTTCCCCGCGTGCCTCACAAAGTCCGGCTACAAGAACCTCTACGAGGCCTTTAAAACGCACGCAACGACAGCACTCGACGAGGCCGAAAAGCTAGGCCTCAAACGAAACGAAGCGTGCCACAACGTCGTTTTCACTGCAGGGTTCAACGCCTACGGAGGGTTAAAGAACCAGTTCCCCTACGTCTTAAAATGGCTAGGGCTAAGCGGCGAAAAGCTCCATGCTGACCTCGCGCGTGAGGTTCGGCGCGTGGTGAACGACGAGGGAGGTGTCACGTTCACCGCGTTGGAGAACATGCCTCTCGTGAAGTCCGTGGTGTACGAGGTAATAAGAGTAATGATACACTTGTAACATCTTTAAAAGAATTGATGTGATGGGTTCTTCAACTCAACAATCTATCGAATTATC
Coding sequences of Glyma07g21100
>Glyma07g21100.1   sequence type=CDS   gene model=Glyma07g21100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTTCACTTATAAAAAACAAAATAAACCACCTTGCTCCTCCAACACACCACTATTCTTCACTCCTCCTCCTCCCTCTCTCTTCCAAACACACATCCTCAACCATGGCAGCACCATCTTCAGAGACAAAGTCACCATCATCCTCGAACACGCAGCTTCCGCTGAAACCAATCCCAGGCAGCTACGGAATGCCGTTTTTTGGAGCAATAAGCGACAGACACAACTACTTCTACCACCAAGGACGCGACAAGTTCTTCGCGACGAGGATTGAAAAACACAACTCCACCGTGATCCGAACCAACATGCCTCCGGGGCCCTTCATCTCCTCGGACCCTCGTGTCGTCGCGTTGTTGGACGGTGCCTCCTTCCCGATCCTCTTCGACAACGACAAGGTCGAGAAGCTCAACGTTCTCGACGGCACCTTCATGCCTTCCACCAAGTTCACCGGCGGGTTCCGCGTCTGCGCCTACCTCGACACCACCGAACCCAACCACGCACTCATCAAACAGTTCTTCCTTAACGTCCTCGCCAAGCGAAAAGACTCTTTTGTCCCTCTGTTCCGAAACTGCCTCCAGGAGTCGTTCGCGGAGATTGAGGACCAGTTGAGTAAAAACACCAAAGCGGACTTCAACACTGTGTTCAGTGACGCTTCCTTCAACTTCATGTTCAGGTTGTTCTGTGATGGCAAAGACCCTTCGCAGACCAACCTCGGTTCTAAGGGACCGAAGCTCGTGGACACATGGCTTCTCTTTCAGCTGGCCCCACTGGCAACTCTAGGCCTCCCCAAAATCTTCAACTACATCGAAGACTTCCTAATCCGCACACTCCCTTTCCCCGCGTGCCTCACAAAGTCCGGCTACAAGAACCTCTACGAGGCCTTTAAAACGCACGCAACGACAGCACTCGACGAGGCCGAAAAGCTAGGCCTCAAACGAAACGAAGCGTGCCACAACGTCGTTTTCACTGCAGGGTTCAACGCCTACGGAGGGTTAAAGAACCAGTTCCCCTACGTCTTAAAATGGCTAGGGCTAAGCGGCGAAAAGCTCCATGCTGACCTCGCGCGTGAGGTTCGGCGCGTGGTGAACGACGAGGGAGGTGTCACGTTCACCGCGTTGGAGAACATGCCTCTCGTGAAGTCCGTGGTGTACGAGGTAATGCGGATCGAACCTGCGGTGCCGTACCAGTACGCACGCGCGAGGGAGAACCTTGTCGTTTCGAGCCATGACGCGTCGTTTGAGGTGAAGAAGGGGGAGATGCTGTTCGGGTACCAGCCGTTTGCGACGAGGGATCCGAGGATCTTCGAGGATGCTGAGGTGTTTGTTCCGCGGAGGTTTGTTGGGGAGGGGGAGAAGATGCTGAAGCACGTGCTGTGGTCGAATGGGAGGGAGACGGAGGAGCCTTCGGCGAGTAATAAGCAGTGTCCCGGGAAGAATCTGGTGGTGCTGCTGTGCAGGTTGTTTCTGGTGGAACTCTTTTTGCGTTATGATACGTTTGAGTTTGAGTATACGCAGGCTGGGTTTGGTCCTACTATTACCATTAAGTCCCTCACTAAGGCCTCTACCATCTGA

>Glyma07g21100.2   sequence type=CDS   gene model=Glyma07g21100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTTCACTTATAAAAAACAAAATAAACCACCTTGCTCCTCCAACACACCACTATTCTTCACTCCTCCTCCTCCCTCTCTCTTCCAAACACACATCCTCAACCATGGCAGCACCATCTTCAGAGACAAAGTCACCATCATCCTCGAACACGCAGCTTCCGCTGAAACCAATCCCAGGCAGCTACGGAATGCCGTTTTTTGGAGCAATAAGCGACAGACACAACTACTTCTACCACCAAGGACGCGACAAGTTCTTCGCGACGAGGATTGAAAAACACAACTCCACCGTGATCCGAACCAACATGCCTCCGGGGCCCTTCATCTCCTCGGACCCTCGTGTCGTCGCGTTGTTGGACGGTGCCTCCTTCCCGATCCTCTTCGACAACGACAAGGTCGAGAAGCTCAACGTTCTCGACGGCACCTTCATGCCTTCCACCAAGTTCACCGGCGGGTTCCGCGTCTGCGCCTACCTCGACACCACCGAACCCAACCACGCACTCATCAAACAGTTCTTCCTTAACGTCCTCGCCAAGCGAAAAGACTCTTTTGTCCCTCTGTTCCGAAACTGCCTCCAGGAGTCGTTCGCGGAGATTGAGGACCAGTTGAGTAAAAACACCAAAGCGGACTTCAACACTGTGTTCAGTGACGCTTCCTTCAACTTCATGTTCAGGTTGTTCTGTGATGGCAAAGACCCTTCGCAGACCAACCTCGGTTCTAAGGGACCGAAGCTCGTGGACACATGGCTTCTCTTTCAGCTGGCCCCACTGGCAACTCTAGGCCTCCCCAAAATCTTCAACTACATCGAAGACTTCCTAATCCGCACACTCCCTTTCCCCGCGTGCCTCACAAAGTCCGGCTACAAGAACCTCTACGAGGCCTTTAAAACGCACGCAACGACAGCACTCGACGAGGCCGAAAAGCTAGGCCTCAAACGAAACGAAGCGTGCCACAACGTCGTTTTCACTGCAGGGTTCAACGCCTACGGAGGGTTAAAGAACCAGTTCCCCTACGTCTTAAAATGGCTAGGGCTAAGCGGCGAAAAGCTCCATGCTGACCTCGCGCGTGAGGTTCGGCGCGTGGTGAACGACGAGGGAGGTGTCACGTTCACCGCGTTGGAGAACATGCCTCTCGTGAAGTCCGTGGTGTACGAGGTAATAAGAGTAATGATACACTTGTAA
Predicted protein sequences of Glyma07g21100
>Glyma07g21100.1   sequence type=predicted peptide   gene model=Glyma07g21100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MISLIKNKINHLAPPTHHYSSLLLLPLSSKHTSSTMAAPSSETKSPSSSNTQLPLKPIPGSYGMPFFGAISDRHNYFYHQGRDKFFATRIEKHNSTVIRTNMPPGPFISSDPRVVALLDGASFPILFDNDKVEKLNVLDGTFMPSTKFTGGFRVCAYLDTTEPNHALIKQFFLNVLAKRKDSFVPLFRNCLQESFAEIEDQLSKNTKADFNTVFSDASFNFMFRLFCDGKDPSQTNLGSKGPKLVDTWLLFQLAPLATLGLPKIFNYIEDFLIRTLPFPACLTKSGYKNLYEAFKTHATTALDEAEKLGLKRNEACHNVVFTAGFNAYGGLKNQFPYVLKWLGLSGEKLHADLAREVRRVVNDEGGVTFTALENMPLVKSVVYEVMRIEPAVPYQYARARENLVVSSHDASFEVKKGEMLFGYQPFATRDPRIFEDAEVFVPRRFVGEGEKMLKHVLWSNGRETEEPSASNKQCPGKNLVVLLCRLFLVELFLRYDTFEFEYTQAGFGPTITIKSLTKASTI*

>Glyma07g21100.2   sequence type=predicted peptide   gene model=Glyma07g21100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MISLIKNKINHLAPPTHHYSSLLLLPLSSKHTSSTMAAPSSETKSPSSSNTQLPLKPIPGSYGMPFFGAISDRHNYFYHQGRDKFFATRIEKHNSTVIRTNMPPGPFISSDPRVVALLDGASFPILFDNDKVEKLNVLDGTFMPSTKFTGGFRVCAYLDTTEPNHALIKQFFLNVLAKRKDSFVPLFRNCLQESFAEIEDQLSKNTKADFNTVFSDASFNFMFRLFCDGKDPSQTNLGSKGPKLVDTWLLFQLAPLATLGLPKIFNYIEDFLIRTLPFPACLTKSGYKNLYEAFKTHATTALDEAEKLGLKRNEACHNVVFTAGFNAYGGLKNQFPYVLKWLGLSGEKLHADLAREVRRVVNDEGGVTFTALENMPLVKSVVYEVIRVMIHL*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo