Glyma07g20580 - SoyBase

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Report for Sequence Feature Glyma07g20580

Feature Type:	gene_model
Chromosome:	Gm07
Start:	21067246
stop:	21070399
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g20580

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G18950	AT	Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein \| chr5:6328519-6329970 REVERSE LENGTH=483	SoyBase	E_val: 4.00E-130	ISS
GO:0006259	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA metabolic process	SoyBase	N/A	ISS
GO:0007059	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromosome segregation	SoyBase	N/A	ISS
GO:0007062	GO-bp	Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion	SoyBase	N/A	ISS
GO:0007129	GO-bp	Annotation by Michelle Graham. GO Biological Process: synapsis	SoyBase	N/A	ISS
GO:0007131	GO-bp	Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009410	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to xenobiotic stimulus	SoyBase	N/A	ISS
GO:0010332	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to gamma radiation	SoyBase	N/A	ISS
GO:0032204	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of telomere maintenance	SoyBase	N/A	ISS
GO:0032504	GO-bp	Annotation by Michelle Graham. GO Biological Process: multicellular organism reproduction	SoyBase	N/A	ISS
GO:0033044	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of chromosome organization	SoyBase	N/A	ISS
GO:0042138	GO-bp	Annotation by Michelle Graham. GO Biological Process: meiotic DNA double-strand break formation	SoyBase	N/A	ISS
GO:0043247	GO-bp	Annotation by Michelle Graham. GO Biological Process: telomere maintenance in response to DNA damage	SoyBase	N/A	ISS
GO:0045132	GO-bp	Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation	SoyBase	N/A	ISS
GO:0048522	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of cellular process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_G7K4G7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7K4G7_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KKP3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KKP3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g20580

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g20580 not represented in the dataset	Glyma07g20580 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma07g20580 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g161500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g20580

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g20580

Limit To All Plant Sequences

>Glyma07g20580.2   sequence type=transcript   gene model=Glyma07g20580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAAAATCATAAATCACGAAAAAGGAAACCCTTATTCTCCGTGGCTTTCCCAGGTTGGCTTCTCTATCTGCAACTCCATCCACGCTTTTTTTATTTTATTTTTAATTTGTCCACCTTTCTCTCTCCACGGCTCCCCCACTCAAATTCACCCCTCTCCGCCAACCCCCACCGACCTGCGTCAGAACCTCCAGTGGCGTGGCTCCGATCTGATCGTGCGCGTCGGGAAGCCCGAGACGATTCTCATGGAGATCGCGATGGCTGTCGGTCATGGCTGTACCAGTGAGTAACAGATCTCGTGAGTGTAGCTTTTGAGAGGGACGGTGAAGGTGATTGTTATTGATTTTCTGGATCTTTCATTTTTGTGATTTATAAATTTGATATGTTGCACTGCCACAAGTAACAGGGGAGACTATGTTTTTGAGGTTTTTCTTAAGAAACATATAGCGGCAGTTTTTAGCTGCCACTATTTTCATTAATTATTCAAAAACTTAAATTAACGAAATACTGCACGTTTTAGACAGAAAAAAAATATAAAAAAGAAAAAAGAAACACTAATGGGGAAGTCATTTTTAAACCGTTAGATAAAATAGTTATAAAATCAACGATTCAAATTTTCTTTCTTTCTATTTTCTTCTTTTCCAATTTCCCCTAATACTCTTCACTCTCACCCCACACCCTCCCTTCTTCGCCTCTTCCTTCGGTCCACTCCGCCGCCTCCTAACCCAACCACGACGGCGGATTCCTCTCGAACAAAAACTGAGCGCAAAAACTCTTATTCGAATTCGTGTGCATCGTCACGTGCCATTCATCTCTCTAAAACCCTGCTCAAGTGCGTGCGACAGCTGCAACCGCAACACTTGTAATCTCTTCCAATTCAAGATTTCTCAGCTCTCTGTGCCTATGCTACAATGTATGTTTGAACACTGAAGTTCAGAAACAATAACTGCTTCTTCTTCTTATGCTAATTGTTTGAGCTGCATATACCAATTCCATAACCATGTTAATGGTGAGAAGAACCCCTTCGTATTCTTTAGTAACCTTTTATGTCCGCCGAAGCATTGCCCAATTTCGAAACCTCACCTCAGAGACCAAAAATGGGGATCATGAACATCCCACCAAAGCCCTAGATGCTAAAGACTGCAACTTTGTCTATGAAATTTGTAGGATTACCCGAACAAAGCCCCGTTGGGAGGACACCCTTCTTTCCCAGTACCCATCTTTCAACTTTAAAGACCCCTCTTTCTTCCTCCTTTATCTCAAGCACCAGAACAATGCCTTCCTTTCCCTTCGTTTCTTTCACTGGCTGTGCTCTTCTTGTGGTTTCTCCCCCGACCAGTCTTCTTGTAACGTGCTTTTCCAAGTGCTTGTGGATGCTGGGGCCGGCAAACTAGCAAAATCCTTGCTTGATAGCCCGGGTTTCACTCCTGAGCCTGCTTCCTTGGAGGGTTACATTCAGTGTCTCAGCGGTGCTGGGATGGTTGAAGATGCAGTTGATATGCTGAAAAGGGTTGTGTTTTGCCCCTCGGTGGCAACTTGGAATGCATCTCTGTTGGGTTGTTTGAGGGCTCGAAGGACTGATCTGGTATGGACATTGTATGAACAGATGATGGAATCTGGTGTTGTTGCTAGCATTAATGTTGAAACTGTTGGATATCTGATAATGGCGTTCTGTGCAGAATACAAAGTCCTCAAAGGGTATGAACTTCTTAAGGAACTTCTGGAAAATGGCTTATGTCCCGACAATGTTGTTTTCAATGAACTTATAAGAGGATTTTGTAAGGAGGGACAATATGATAGAGTTTCTGAGATCCTTCATATTATGATTGCCAAGCAATGTAATCCGGATGTCTCTACTTATCAAGAAATCATATATGGACTCTTGAAGATGAAGAATTCTGAGGGTTTCCAGGTTTTTAATGATCTCAAGGACAGAGGATATTTCCCAGACAGGGTTATGTACACAACGGTGATCAAGGGTCTATGTGAGATGCAACGGCTCGGGGAGGCCAGGAAGCTGTGGTTTGAGATGATTAAAAAAGGATTTCAGCCAAATGAATACACCTATAATGTAATGATGCATGGGTATTGTAAGATTGGTGATCTTGCGGAGGCAAGGAAGATCTTTGAGGATATGCGTGATAGAGGTTATGCAGAAACCACAGTTAGCTATGGCACAATGATTTCAGGTTTGTGTTTGCATGGAAGGACAGATGAAGCACAGAGCTTGTTTGAAGAAATGTTTCAAAAGGGAATCGTTCCTGATTTGATTACGTACAACTGTCTTATTAAGGCCCTTTGCAAGGAAGTGAAGATAGTTAAGGCAAGAAAACTATTAAATTTACTTCTGGCACAGGGTTTAGAGCTATCGGTTTTCTCTTTTAGTCCTCTTATAAAACAACTTTGTATAGTCGGAAACACAAAGGGTGCAATAACATTGTGGAAAGATATGCATGATAGGCTTTTGGAACCTACCGCCAGTATATTTGGAATTGAATGGTTGCTAAACATGCTGAGTTGGAAGCAGAAACCCCAGAAGCAGACTTTTGAGTACCTGATTAACAGTCTATCACAAGAAAATAGGTTGGATGATATTTTGGTTGTTTTAGATTTCATGTTTAGAATAGGATATATACTCGAAAAAGGGACAATTTATTCCTTGGTGAGTAAATTTAGCAGGGATAATTTTCATTTTCCTGACTTATGTTTGGAGAAGATCTTAGAAAGAAATTGATAGTAGATTGTGTTGTTTGTATCTTCCATCTACTATCTATGACCAATAAGTGAAGAATTTTTTGAGTTTCTTTTGTAAACGTGAATTTATATTCTATGCTTCTGTTTCTTTGGAGGTTCATTCTTGAAGCTTCCCATTGTATGGCTTGAAGTTGCAACTTGTCTGCTGTTTTTTTTTTTTTTTTTTTTTTTCATTTTGAAATT

Coding sequences of Glyma07g20580

Limit To All Plant Sequences

>Glyma07g20580.1   sequence type=CDS   gene model=Glyma07g20580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTAATGGTGAGAAGAACCCCTTCGTATTCTTTAGTAACCTTTTATGTCCGCCGAAGCATTGCCCAATTTCGAAACCTCACCTCAGAGACCAAAAATGGGGATCATGAACATCCCACCAAAGCCCTAGATGCTAAAGACTGCAACTTTGTCTATGAAATTTGTAGGATTACCCGAACAAAGCCCCGTTGGGAGGACACCCTTCTTTCCCAGTACCCATCTTTCAACTTTAAAGACCCCTCTTTCTTCCTCCTTTATCTCAAGCACCAGAACAATGCCTTCCTTTCCCTTCGTTTCTTTCACTGGCTGTGCTCTTCTTGTGGTTTCTCCCCCGACCAGTCTTCTTGTAACGTGCTTTTCCAAGTGCTTGTGGATGCTGGGGCCGGCAAACTAGCAAAATCCTTGCTTGATAGCCCGGGTTTCACTCCTGAGCCTGCTTCCTTGGAGGGTTACATTCAGTGTCTCAGCGGTGCTGGGATGGTTGAAGATGCAGTTGATATGCTGAAAAGGGTTGTGTTTTGCCCCTCGGTGGCAACTTGGAATGCATCTCTGTTGGGTTGTTTGAGGGCTCGAAGGACTGATCTGGTATGGACATTGTATGAACAGATGATGGAATCTGGTGTTGTTGCTAGCATTAATGTTGAAACTGTTGGATATCTGATAATGGCGTTCTGTGCAGAATACAAAGTCCTCAAAGGGTATGAACTTCTTAAGGAACTTCTGGAAAATGGCTTATGTCCCGACAATGTTGTTTTCAATGAACTTATAAGAGGATTTTGTAAGGAGGGACAATATGATAGAGTTTCTGAGATCCTTCATATTATGATTGCCAAGCAATGTAATCCGGATGTCTCTACTTATCAAGAAATCATATATGGACTCTTGAAGATGAAGAATTCTGAGGGTTTCCAGGTTTTTAATGATCTCAAGGACAGAGGATATTTCCCAGACAGGGTTATGTACACAACGGTGATCAAGGGTCTATGTGAGATGCAACGGCTCGGGGAGGCCAGGAAGCTGTGGTTTGAGATGATTAAAAAAGGATTTCAGCCAAATGAATACACCTATAATGTAATGATGCATGGGTATTGTAAGATTGGTGATCTTGCGGAGGCAAGGAAGATCTTTGAGGATATGCGTGATAGAGGTTATGCAGAAACCACAGTTAGCTATGGCACAATGATTTCAGGTTTGTGTTTGCATGGAAGGACAGATGAAGCACAGAGCTTGTTTGAAGAAATGTTTCAAAAGGGAATCGTTCCTGATTTGATTACGTACAACTGTCTTATTAAGGCCCTTTGCAAGGAAGTGAAGATAGTTAAGGCAAGAAAACTATTAAATTTACTTCTGGCACAGGGTTTAGAGCTATCGGTTTTCTCTTTTAGTCCTCTTATAAAACAACTTTGTATAGTCGGAAACACAAAGGGTGCAATAACATTGTGGAAAGATATGCATGATAGGCTTTTGGAACCTACCGCCAGTATATTTGGAATTGAATGGTTGCTAAACATGCTGAGTTGGAAGCAGAAACCCCAGAAGCAGACTTTTGAGTACCTGATTAACAGTCTATCACAAGAAAATAGGTTGGATGATATTTTGGTTGTTTTAGATTTCATGTTTAGAATAGGATATATACTCGAAAAAGGGACAATTTATTCCTTGGTGAGTAAATTTAGCAGGGATAATTTTCATTTTCCTGACTTATGTTTGGAGAAGATCTTAGAAAGAAATTGA

>Glyma07g20580.2   sequence type=CDS   gene model=Glyma07g20580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTAATGGTGAGAAGAACCCCTTCGTATTCTTTAGTAACCTTTTATGTCCGCCGAAGCATTGCCCAATTTCGAAACCTCACCTCAGAGACCAAAAATGGGGATCATGAACATCCCACCAAAGCCCTAGATGCTAAAGACTGCAACTTTGTCTATGAAATTTGTAGGATTACCCGAACAAAGCCCCGTTGGGAGGACACCCTTCTTTCCCAGTACCCATCTTTCAACTTTAAAGACCCCTCTTTCTTCCTCCTTTATCTCAAGCACCAGAACAATGCCTTCCTTTCCCTTCGTTTCTTTCACTGGCTGTGCTCTTCTTGTGGTTTCTCCCCCGACCAGTCTTCTTGTAACGTGCTTTTCCAAGTGCTTGTGGATGCTGGGGCCGGCAAACTAGCAAAATCCTTGCTTGATAGCCCGGGTTTCACTCCTGAGCCTGCTTCCTTGGAGGGTTACATTCAGTGTCTCAGCGGTGCTGGGATGGTTGAAGATGCAGTTGATATGCTGAAAAGGGTTGTGTTTTGCCCCTCGGTGGCAACTTGGAATGCATCTCTGTTGGGTTGTTTGAGGGCTCGAAGGACTGATCTGGTATGGACATTGTATGAACAGATGATGGAATCTGGTGTTGTTGCTAGCATTAATGTTGAAACTGTTGGATATCTGATAATGGCGTTCTGTGCAGAATACAAAGTCCTCAAAGGGTATGAACTTCTTAAGGAACTTCTGGAAAATGGCTTATGTCCCGACAATGTTGTTTTCAATGAACTTATAAGAGGATTTTGTAAGGAGGGACAATATGATAGAGTTTCTGAGATCCTTCATATTATGATTGCCAAGCAATGTAATCCGGATGTCTCTACTTATCAAGAAATCATATATGGACTCTTGAAGATGAAGAATTCTGAGGGTTTCCAGGTTTTTAATGATCTCAAGGACAGAGGATATTTCCCAGACAGGGTTATGTACACAACGGTGATCAAGGGTCTATGTGAGATGCAACGGCTCGGGGAGGCCAGGAAGCTGTGGTTTGAGATGATTAAAAAAGGATTTCAGCCAAATGAATACACCTATAATGTAATGATGCATGGGTATTGTAAGATTGGTGATCTTGCGGAGGCAAGGAAGATCTTTGAGGATATGCGTGATAGAGGTTATGCAGAAACCACAGTTAGCTATGGCACAATGATTTCAGGTTTGTGTTTGCATGGAAGGACAGATGAAGCACAGAGCTTGTTTGAAGAAATGTTTCAAAAGGGAATCGTTCCTGATTTGATTACGTACAACTGTCTTATTAAGGCCCTTTGCAAGGAAGTGAAGATAGTTAAGGCAAGAAAACTATTAAATTTACTTCTGGCACAGGGTTTAGAGCTATCGGTTTTCTCTTTTAGTCCTCTTATAAAACAACTTTGTATAGTCGGAAACACAAAGGGTGCAATAACATTGTGGAAAGATATGCATGATAGGCTTTTGGAACCTACCGCCAGTATATTTGGAATTGAATGGTTGCTAAACATGCTGAGTTGGAAGCAGAAACCCCAGAAGCAGACTTTTGAGTACCTGATTAACAGTCTATCACAAGAAAATAGGTTGGATGATATTTTGGTTGTTTTAGATTTCATGTTTAGAATAGGATATATACTCGAAAAAGGGACAATTTATTCCTTGGTGAGTAAATTTAGCAGGGATAATTTTCATTTTCCTGACTTATGTTTGGAGAAGATCTTAGAAAGAAATTGA

Predicted protein sequences of Glyma07g20580

Limit To All Plant Sequences

>Glyma07g20580.1   sequence type=predicted peptide   gene model=Glyma07g20580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLMVRRTPSYSLVTFYVRRSIAQFRNLTSETKNGDHEHPTKALDAKDCNFVYEICRITRTKPRWEDTLLSQYPSFNFKDPSFFLLYLKHQNNAFLSLRFFHWLCSSCGFSPDQSSCNVLFQVLVDAGAGKLAKSLLDSPGFTPEPASLEGYIQCLSGAGMVEDAVDMLKRVVFCPSVATWNASLLGCLRARRTDLVWTLYEQMMESGVVASINVETVGYLIMAFCAEYKVLKGYELLKELLENGLCPDNVVFNELIRGFCKEGQYDRVSEILHIMIAKQCNPDVSTYQEIIYGLLKMKNSEGFQVFNDLKDRGYFPDRVMYTTVIKGLCEMQRLGEARKLWFEMIKKGFQPNEYTYNVMMHGYCKIGDLAEARKIFEDMRDRGYAETTVSYGTMISGLCLHGRTDEAQSLFEEMFQKGIVPDLITYNCLIKALCKEVKIVKARKLLNLLLAQGLELSVFSFSPLIKQLCIVGNTKGAITLWKDMHDRLLEPTASIFGIEWLLNMLSWKQKPQKQTFEYLINSLSQENRLDDILVVLDFMFRIGYILEKGTIYSLVSKFSRDNFHFPDLCLEKILERN*

>Glyma07g20580.2   sequence type=predicted peptide   gene model=Glyma07g20580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLMVRRTPSYSLVTFYVRRSIAQFRNLTSETKNGDHEHPTKALDAKDCNFVYEICRITRTKPRWEDTLLSQYPSFNFKDPSFFLLYLKHQNNAFLSLRFFHWLCSSCGFSPDQSSCNVLFQVLVDAGAGKLAKSLLDSPGFTPEPASLEGYIQCLSGAGMVEDAVDMLKRVVFCPSVATWNASLLGCLRARRTDLVWTLYEQMMESGVVASINVETVGYLIMAFCAEYKVLKGYELLKELLENGLCPDNVVFNELIRGFCKEGQYDRVSEILHIMIAKQCNPDVSTYQEIIYGLLKMKNSEGFQVFNDLKDRGYFPDRVMYTTVIKGLCEMQRLGEARKLWFEMIKKGFQPNEYTYNVMMHGYCKIGDLAEARKIFEDMRDRGYAETTVSYGTMISGLCLHGRTDEAQSLFEEMFQKGIVPDLITYNCLIKALCKEVKIVKARKLLNLLLAQGLELSVFSFSPLIKQLCIVGNTKGAITLWKDMHDRLLEPTASIFGIEWLLNMLSWKQKPQKQTFEYLINSLSQENRLDDILVVLDFMFRIGYILEKGTIYSLVSKFSRDNFHFPDLCLEKILERN*

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