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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G42820 | AT | Annotation by Michelle Graham. TAIR10: Zinc finger C-x8-C-x5-C-x3-H type family protein | chr5:17170445-17171296 REVERSE LENGTH=283 | SoyBase | E_val: 2.00E-127 | ISS |
| GO:0009640 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photomorphogenesis | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0009845 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed germination | SoyBase | N/A | ISS |
| GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
| GO:0009933 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem structural organization | SoyBase | N/A | ISS |
| GO:0010162 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed dormancy process | SoyBase | N/A | ISS |
| GO:0010182 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem | SoyBase | N/A | ISS |
| GO:0016567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein ubiquitination | SoyBase | N/A | ISS |
| GO:0019915 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid storage | SoyBase | N/A | ISS |
| GO:0048573 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering | SoyBase | N/A | ISS |
| GO:0050826 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to freezing | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG2202 | KOG | U2 snRNP splicing factor, small subunit, and related proteins | JGI | ISS | |
| PTHR12620 | Panther | U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT | JGI | ISS | |
| PF00076 | PFAM | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | JGI | ISS | |
| PF00642 | PFAM | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | JGI | ISS | |
| UniRef100_B6TRJ7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Splicing factor U2af 38 kDa subunit n=1 Tax=Zea mays RepID=B6TRJ7_MAIZE | SoyBase | E_val: 2.00E-135 | ISS |
| UniRef100_I1KKN4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KKN4_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma07g20090 not represented in the dataset |
Glyma07g20090 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g00950 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g159900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g20090.4 sequence type=transcript gene model=Glyma07g20090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTTTAGAATAAAAAATATACTAAAATATTTTGCAGAAAGAAATTCAAACATTGCCGATCTTTGATCCTGATCTTCAGACGAAGAAAAACATATTTTAATCTAAATTAAATTTGAAAAATCAAAGTAGTTAGTAGCTAGCAACCTACAGATCGAACTCGAGGACCATCACCGATCCGTTAATTGTTCCCCACCCCGCTTACAATTAGGGTTTCCAAAACCCTACACTACACATTGAGCAAACGCAGATTCAAATCAATTAATCACTCACTGACTCACCAAATTCATCAAATCAACACTCCGATTCAGCTCTCAGCAGCACCACCACGTCATGGCGGAGCACCTTGCATCGATCTTCGGCACGGAGAAGGACCGCGTGAACTGCCCGTTCTACTTCAAGATCGGCGCGTGCCGCCACGGCGACCGCTGCTCGCGCCTCCACAACCGTCCCAGCATCTCCCCGACCCTCCTCCTCTCCAACATGTACCAGCGCCCCGACATGATCACTCCCGGCGTCGACCCGCAGGGCCAGCCCCTCGACCCCCGCAAGATCCAGCAGCACTTCGAGGACTTCTACGAGGACATCTTCACCGAACTCGCCAAATTCGGCGACATCGAGAGCCTCAACGTCTGCGACAACCTCGCCGACCACATGATCGGCAACGTCTATGTTCAGTTCCGCGAGGAGGACCAGGCTGCAAAAGCCCTCCACGCACTCCATGGGAGATTCTACAACGCGCGTCCCATTATTGCCGATTTCTCCCCCGTCACCGACTTCCGTGAGGCCACGTGTCGGCAGTTCGAGGAGAATAGTTGCAACCGCGGCGGGTATTGTAACTTCATGCATGTGAAGCTCATCGGGAGGGATCTACGGAGGCGCCTATTCGGCCGCCACCACCGCGGAGGCAGTGGGACGTATCACCGCGTGAGCCGGAGCCGGAGCAGGAGCCGGAGCAGGAGTGGCAGCCCGAGGCACCGCCGGGAGAGACACGAGAGGGATTCTCGTGGGAGGAGGAGCAGGGAGAGGGAGTATAGAGAGAGGGACGGTGGCGGACGGAGGAGGCATGGGAGTCCGGCCAGGGAAGGGAGCGAGGAGCGCCGTGCGAGGATCGAGCAGTGGAATCGGGAGAGGGAAGAGAAACAATGATTTCGCAATGATTCTGTGTTCATTTGCTTGCGAAGAATGAATAAACCATCAATTAAGTCCTCAAACTATTATTACCCTGTGTCTCTCCTTAGTAGTCCTTAAAGTAATGAATGAAATTAGTGTTTAAGGAATGTATGGAGGGCTGAATGTCCGTCACTGTACTCTAATTTAGAAGGTTATGTTAATATTTGGAAGATTACTTGGCATGCTTTATTGGACTTTTAGGACTACTTAAATAGTTTAGTTTTTTTTTATTAGTTTAGGGAAGAGGGTGTAATAGTGTAAGGATGGAATTGGTGGTTTACTTTGCATGGTGAATGGTGGCAGCGCTAATAATGAAACCCTCTCACTGCTGTGTTGTACTTACGGCTAGGTGCTATAGGGGGATTGGTAGTGCAGCTGATATTCTTGGAATGTAGGAATTGCAATTCAAAGATTAACGAAGTTGGGGTTTGAATTGCCTCTAGTAAGACTGCACGTTTATATTATTAGTTATTATCTTTATTTAAACGTTTGCATGTGAGATTGGAATCCTTTTTCTTCAGATGCCATTTTGGCTGGTCCACCTGTGAATTTTATAACGTGCTTTCTTTCTTGTCTTTACAGCACTATAGGTATATAAAAGCATGTTTCGGAGAAATGTTTTTGATGAATCCAAGTGCTTAATTCTGAACAAATATGAGACAACTAAGATGGGCAACTTCTGGTTTGTTATCGTGGGATTTTTCCCTCTTGGGCAATGGTGGTATTTGAGATCGCTAAACATAGGTTGATATCATTGCTTAGTCGGTGTTTGGTTTTATTTATTTAGGAGAAATGATCGCTAATGTCTTTTGGCTTCTTGGGAGGCTATTATTTCTCTAAATTTAAGTTTGAACCAAGCCATCAATTTATGCTTAATCCAATTGCTTTAGCCTTTGGGGTATGTTTAGGAGTTTGGATTTGGAAGGGAAGGGAAGGGAAGGGAGGGCAAAATTTTTATTTGTAATTTGATAATTTTTTTATAAATAAAATAAAATGATAGATTAGTATAAACTTAACCTAATAATCTTTTATATAAATTATATATAAAGTTATAAACTTAACCTATATATATATATGCCCTCTCCACTTTTCTCATTCAAAACTCTCAACTCCGAGAGGACTTTTTAGCTAGGCACCACTTGGCAGCGTGACTCACAGGTTTTTTATGGGATTGTCCAATAAAAGTTCCCATTTTAAGAAAAAGCAGTTCTTCACGTACTATCAGTTAGGAAGGAACAAGGATTATCATCATCTGATATAATATACAGTGCAGCAGTTTAGATTCCTGAAACCCAAGATAATACTGGTAAGATGTCCAGAACAGTATGTTCCCATTTTTGGTTGAGTTGAAAGGACATTGACTGAACTTTTAAGGAGGAGGGTCCATTGACTGAGCTTTTATTGTATGTTTGGTTGAGTGGAAAGGACATAGAGAAAAAGGAAAATATAGATAATGATATTTTTTTCTTTTCTGTTTGGTTACAACAAAAGTGGAAGGAAAAGGCAGAATCAAGTTGACTTCAGAAAACAAAAATTTCAAAATTTTTCTTTCTTTCACTTTTCCTTCTATTTTCACACTTTTCTCTCACTATTTTTTCTTCTTATAGTCTGTTTGACATAAAGTTTGAATTGAAGAGTGAATTTTTTTTCCCTCTCTTTCTGAATTGTCTTTAGAAACAGTATTTTTTTTTCTTGATTTTCTCTCAAAATAAATTGTCATTTATGTTTTCTTTTCTTTCTATTTGTTTTTCTTCCTTCCAAATATACCATTAGTATCAAATCTGTATAATATGATTATCATCCAACAAAATCCACTGCAGTTGATTGAGTTCTAGGCATATTGATCAGTAGAATTTAAGGTCTTACTGCAGTGGTTTTGTGAAGTTGCAAGAGGGGAAACTGAACTATTATGTTTCTAAGACAGTTTGAAGGAGAGCTATGGGAATAAACCAACAAAACAACTGGTTTTCTGGCCCTTTACTTCAGATTTTTCCAAAGGGTGCATTCAGAAGAAAAGGAATAATCTATAATTCAGAGAAAAACAACTGGTCTTGTTCCTATTTAAGCGTCTTATTTCATCCTTTTTGGTAGTGTGTTGTCTGTTGGTATAAATGTAAATTTTATAAGCATTCATGGATGTGGATGAAATTTAAAATCAAATTTGTGAACAATGAAATTATCGAGGAATATGATTAATAATTTGTTCTTAATGTCAGTGCAGTATATTTTCAATGAAATCAAACCTGACTGTTTATGTGTTAAATTAGCTGTCTGTGCTCTTATTTTTCTATATTTTCGAAGATGGGACTTTGTTGGGAGGAAAAAAGAAACAGCACACAGTATATTTGTATATGGGGCTAGGGGCTAGGGCCTAGGGAAATATTATTGCACAAATTCTAAGCTGCTTTGAAAAGACTAAAGTAGGGCATAATAATAGACTATAAGATGGATAGTGGTTGGAAGTTCAGAAAAGTCATTTATGTGTTTATATGAATGATGATTTACCTTGCATGTAATGTTCTTTCGAATCAAGAACTTGGCTCGGTTTAACTCATTTAAACCCCTAGTTGCTACCATGCATAGTCACTTGTTCGTATTTATTAGGGATGTTCACGAGTATGGGTTATTTGTGAATTTGAATTGATCTAAATTGATTTGAATAGTTTGGGTTGAATCATTTATTTACTTGGGTCAAAATTGAATCATACAGATCAAACTATTCATGCATGTGTTGGGTCATAGGTTTAGACTTATAGATTCAATCAAAATCAAATCGAATTGATTAAAATTGATCAAAATTTATAGAGTTGTTTAGTTTGACTTTAAATATGGTTAATATTGAGATTCCAAGTGTTGGAATTGTAAGTGTTGAGACTACTATTGTTGGAACTTCTTAAGGTGGTATTGTATATTGTTATTTGTTTTACCTTTTTTCTTACTTATTTTTTTTGTCATGGTTATAATATTAATAGGTCATATTTGGTTGCTGCAAAGCTTATTGCAAGAAATTAATTTGTAAAAAATAGTTGTGATTTAGACTATTATAGTAAATCTTGTGGA
>Glyma07g20090.3 sequence type=CDS gene model=Glyma07g20090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGGAGCACCTTGCATCGATCTTCGGCACGGAGAAGGACCGCGTGAACTGCCCGTTCTACTTCAAGATCGGCGCGTGCCGCCACGGCGACCGCTGCTCGCGCCTCCACAACCGTCCCAGCATCTCCCCGACCCTCCTCCTCTCCAACATGTACCAGCGCCCCGACATGATCACTCCCGGCGTCGACCCGCAGGGCCAGCCCCTCGACCCCCGCAAGATCCAGCAGCACTTCGAGGACTTCTACGAGGACATCTTCACCGAACTCGCCAAATTCGGCGACATCGAGAGCCTCAACGTCTGCGACAACCTCGCCGACCACATGATCGGCAACGTCTATGTTCAGTTCCGCGAGGAGGACCAGGCTGCAAAAGCCCTCCACGCACTCCATGGGAGATTCTACAACGCGCGTCCCATTATTGCCGATTTCTCCCCCGTCACCGACTTCCGTGAGGCCACGTGTCGGCAGTTCGAGGAGAATAGTTGCAACCGCGGCGGGTATTGTAACTTCATGCATGTGAAGCTCATCGGGAGGGATCTACGGAGGCGCCTATTCGGCCGCCACCACCGCGGAGGCAGTGGGACGTATCACCGCGTGAGCCGGAGCCGGAGCAGGAGCCGGAGCAGGAGTGGCAGCCCGAGGCACCGCCGGGAGAGACACGAGAGGGATTCTCGTGGGAGGAGGAGCAGGGAGAGGGAGTATAGAGAGAGGGACGGTGGCGGACGGAGGAGGCATGGGAGTCCGGCCAGGGAAGGGAGCGAGGAGCGCCGTGCGAGGATCGAGCAGTGGAATCGGGAGAGGGAAGAGAAACAATGA >Glyma07g20090.4 sequence type=CDS gene model=Glyma07g20090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGGAGCACCTTGCATCGATCTTCGGCACGGAGAAGGACCGCGTGAACTGCCCGTTCTACTTCAAGATCGGCGCGTGCCGCCACGGCGACCGCTGCTCGCGCCTCCACAACCGTCCCAGCATCTCCCCGACCCTCCTCCTCTCCAACATGTACCAGCGCCCCGACATGATCACTCCCGGCGTCGACCCGCAGGGCCAGCCCCTCGACCCCCGCAAGATCCAGCAGCACTTCGAGGACTTCTACGAGGACATCTTCACCGAACTCGCCAAATTCGGCGACATCGAGAGCCTCAACGTCTGCGACAACCTCGCCGACCACATGATCGGCAACGTCTATGTTCAGTTCCGCGAGGAGGACCAGGCTGCAAAAGCCCTCCACGCACTCCATGGGAGATTCTACAACGCGCGTCCCATTATTGCCGATTTCTCCCCCGTCACCGACTTCCGTGAGGCCACGTGTCGGCAGTTCGAGGAGAATAGTTGCAACCGCGGCGGGTATTGTAACTTCATGCATGTGAAGCTCATCGGGAGGGATCTACGGAGGCGCCTATTCGGCCGCCACCACCGCGGAGGCAGTGGGACGTATCACCGCGTGAGCCGGAGCCGGAGCAGGAGCCGGAGCAGGAGTGGCAGCCCGAGGCACCGCCGGGAGAGACACGAGAGGGATTCTCGTGGGAGGAGGAGCAGGGAGAGGGAGTATAGAGAGAGGGACGGTGGCGGACGGAGGAGGCATGGGAGTCCGGCCAGGGAAGGGAGCGAGGAGCGCCGTGCGAGGATCGAGCAGTGGAATCGGGAGAGGGAAGAGAAACAATGA
>Glyma07g20090.3 sequence type=predicted peptide gene model=Glyma07g20090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPSISPTLLLSNMYQRPDMITPGVDPQGQPLDPRKIQQHFEDFYEDIFTELAKFGDIESLNVCDNLADHMIGNVYVQFREEDQAAKALHALHGRFYNARPIIADFSPVTDFREATCRQFEENSCNRGGYCNFMHVKLIGRDLRRRLFGRHHRGGSGTYHRVSRSRSRSRSRSGSPRHRRERHERDSRGRRSREREYRERDGGGRRRHGSPAREGSEERRARIEQWNREREEKQ* >Glyma07g20090.4 sequence type=predicted peptide gene model=Glyma07g20090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPSISPTLLLSNMYQRPDMITPGVDPQGQPLDPRKIQQHFEDFYEDIFTELAKFGDIESLNVCDNLADHMIGNVYVQFREEDQAAKALHALHGRFYNARPIIADFSPVTDFREATCRQFEENSCNRGGYCNFMHVKLIGRDLRRRLFGRHHRGGSGTYHRVSRSRSRSRSRSGSPRHRRERHERDSRGRRSREREYRERDGGGRRRHGSPAREGSEERRARIEQWNREREEKQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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