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Report for Sequence Feature Glyma07g19750

Feature Type:gene_model
Chromosome:Gm07
Start:20015488
stop:20018870
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma07g19750
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G13230AT Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:4222514-4224982 FORWARD LENGTH=822 SoyBaseE_val: 0ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
PTHR24015Panther FAMILY NOT NAMED JGI ISS
PTHR24015:SF134Panther SUBFAMILY NOT NAMED JGI ISS
PF01535PFAM PPR repeat JGI ISS
UniRef100_G7K4Q1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7K4Q1_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233907DUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233907D related cluster n=1 Tax=unknown RepID=UPI000233907D SoyBaseE_val: 0ISS

Expression Patterns of Glyma07g19750
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma07g19750 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g159200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma07g19750
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma07g19750
>Glyma07g19750.1   sequence type=CDS   gene model=Glyma07g19750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATCAGATCATTGGGTGATAGCACAAAGCTATTGAGGCTCGTTCTAATAGCGTCACACGGCAAGACTCGTTGTTCCAACAATTTCACGCCATGCTTCTATTTTACTCACCAAGCTGCGTTGGATATGGATTCCCATTCCTACGCCAACATGCTCCAACAAGCCATCCGAAACCGCGACCCCAACGCAGGGAAGAGCCTCCACTGCCACATTCTCAAGCACGGCGCGTCTTTGGACTTGTTCGCCCAGAACATTCTTCTCAACACCTATGTTCATTTCGGCTTTTTGGAGGACGCTTCCAAACTGTTCGACGAAATGCCCCTCACTAACACCGTTTCTTTCGTCACCTTGGCCCAGGGTTTCTCCCGTTCCCACCAATTCCAGCGCGCCCGTCGCTTGCTTTTAAGGTTGTTCAGAGAAGGATATGAGGTGAACCAGTTTGTTTTCACGACTCTTCTCAAGTTGCTGGTGAGCATGGATTTGGCTGATACATGTTTGAGTGTGCATGCATATGTTTATAAGCTTGGTCATCAGGCTGACGCGTTTGTTGGGACTGCGCTTATTGATGCTTATTCTGTCTGTGGAAATGTTGACGCTGCGCGTCAAGTTTTTGATGGAATTTATTTTAAGGACATGGTATCTTGGACTGGGATGGTGGCTTGCTATGCTGAGAATTACTGCCATGAGGATTCGTTGCTACTTTTCTGCCAGATGAGGATTATGGGGTATAGGCCAAACAATTTTACCATTTCTGCCGCACTTAAGTCCTGTAATGGTCTAGAAGCATTTAAGGTTGGGAAAAGTGTTCATGGATGTGCTTTGAAAGTGTGTTATGATAGGGATCTTTATGTTGGCATTGCACTGCTTGAATTGTACACTAAGTCAGGAGAGATTGCCGAGGCACAGCAGTTTTTTGAAGAAATGCCAAAAGATGATCTTATTCCTTGGAGTCTCATGATATCACGGTATGCTCAGAGTGATAAAAGTAAAGAGGCTTTGGAGTTGTTTTGTCGAATGAGGCAATCATCTGTTGTTGTCCCCAATAATTTTACATTTGCCAGTGTACTGCAAGCTTGTGCATCTTTGGTTTTGCTGAATTTGGGAAACCAAATTCATTCTTGTGTACTGAAAGTTGGTCTTGACTCAAATGTGTTTGTTTCAAATGCCCTCATGGATGTTTATGCCAAGTGTGGTGAAATTGAGAACTCCGTGAAATTATTCACGGGATCAACAGAGAAAAATGAGGTAGCTTGGAACACTATAATTGTTGGTTATGTTCAGTTAGGGGATGGGGAGAAAGCATTAAATTTATTTTCAAATATGCTTGGACTGGACATACAGCCAACTGAAGTGACATACTCAAGTGTTCTGCGTGCCTCTGCCAGTTTAGTGGCACTAGAGCCAGGGCGTCAAATTCATTCCTTAACTATCAAAACCATGTATAACAAGGATAGTGTAGTTGCAAATTCTTTGATAGATATGTATGCTAAATGTGGTAGAATTGACGATGCTCGACTAACCTTCGATAAGATGGATAAACAAGATGAAGTTTCATGGAATGCTTTAATTTGTGGATATTCTATACATGGCCTGGGTATGGAGGCTCTAAATTTATTTGATATGATGCAACAGAGTAATAGTAAACCTAATAAACTTACTTTTGTTGGTGTCCTCTCTGCATGTAGCAATGCAGGGTTGTTAGACAAAGGACGAGCTCACTTTAAGTCAATGTTACAAGACTATGGCATTGAACCATGTATAGAACATTATACTTGCATGGTTTGGCTTCTTGGAAGATCAGGTCAATTTGATGAAGCAGTTAAGCTCATTGGAGAAATTCCATTTCAGCCTAGTGTTATGGTGTGGCGTGCATTACTTGGTGCTTGTGTTATCCATAAGAATCTTGATCTGGGAAAAGTTTGTGCACAGCGTGTACTTGAGATGGAGCCCCAAGATGATGCAACCCACGTTCTTCTGTCAAACATGTATGCCACTGCAAAGAGATGGGACAATGTTGCTTATGTTAGGAAAAATATGAAAAAGAAAAAAGTGAAAAAGGAACCGGGCTTGAGCTGGGTTGAGAACCAAGGTGTGGTTCACTATTTCACTGTGGGAGACACCTCTCATCCTAACATTAAACTAATCTTTGCAATGCTTGAATGGTTATACAAGAAAACCAGGGATGCAGGGTATGTTCCTGATTGCAGTGTTGTTTTGCTTGATGTGGAGGATGATGAAAAGGAACGTCTCTTGTGGATGCATAGTGAAAGACTAGCCCTGGCTTTTGGACTGATTCAAATTCCATCTGGGTGTTCTATTCGTATCATTAAAAATCTTCGAATTTGTGTAGATTGTCATGCTGTTATAAAGTTGGTATCAAAAATTGTGCAGAGAGAAATTGTTATCAGAGATATAAATCGGTTCCATCATTTTCGGCAAGGTGTTTGCTCCTGTGGTGACTACTGGTAA
Predicted protein sequences of Glyma07g19750
>Glyma07g19750.1   sequence type=predicted peptide   gene model=Glyma07g19750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIRSLGDSTKLLRLVLIASHGKTRCSNNFTPCFYFTHQAALDMDSHSYANMLQQAIRNRDPNAGKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLFDEMPLTNTVSFVTLAQGFSRSHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLADTCLSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGYSIHGLGMEALNLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIEPCIEHYTCMVWLLGRSGQFDEAVKLIGEIPFQPSVMVWRALLGACVIHKNLDLGKVCAQRVLEMEPQDDATHVLLSNMYATAKRWDNVAYVRKNMKKKKVKKEPGLSWVENQGVVHYFTVGDTSHPNIKLIFAMLEWLYKKTRDAGYVPDCSVVLLDVEDDEKERLLWMHSERLALAFGLIQIPSGCSIRIIKNLRICVDCHAVIKLVSKIVQREIVIRDINRFHHFRQGVCSCGDYW*






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