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Report for Sequence Feature Glyma07g19441

Feature Type:gene_model
Chromosome:Gm07
Start:19398651
stop:19404251
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma07g19441
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G66654AT Annotation by Michelle Graham. TAIR10: Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein | chr3:2088694-2090297 FORWARD LENGTH=236 SoyBaseE_val: 8.00E-88ISS
GO:0006457GO-bp Annotation by Michelle Graham. GO Biological Process: protein folding SoyBaseN/AISS
GO:0005768GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endosome SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005802GO-cc Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0003755GO-mf Annotation by Michelle Graham. GO Molecular Function: peptidyl-prolyl cis-trans isomerase activity SoyBaseN/AISS
KOG0881 KOG Cyclophilin type peptidyl-prolyl cis-trans isomerase JGI ISS
PTHR11071Panther CYCLOPHILIN JGI ISS
PTHR11071:SF20Panther gb def: similarity to copii-coated vesicle proteins [schizosaccharomyces pombe] JGI ISS
PF00160PFAM Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JGI ISS
UniRef100_I3XK00UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cyclophilin-like peptidyl-prolyl cis-trans isomerase n=1 Tax=Cirsium arvense RepID=I3XK00_CIRAR SoyBaseE_val: 1.00E-94ISS
UniRef100_UPI000233907BUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233907B related cluster n=1 Tax=unknown RepID=UPI000233907B SoyBaseE_val: 2.00E-164ISS

Expression Patterns of Glyma07g19441
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g19441 not represented in the dataset
Glyma07g19441 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g19441
ParalogEvidenceComments
Glyma20g00820 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g19441 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g157800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma07g19441
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma07g19441
>Glyma07g19441.2   sequence type=transcript   gene model=Glyma07g19441   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTATCTTTCAAACTTGGTTCCTGTCTCTTCATTGACGTGCTTTCCTCATCCTTCTAATTCCTGCTCCTTACAAATCCAATTCCCTCTTCGTTTCATTCTCTCTCTCTCTCTCTCTCTCTCATTCTTCCCTGTGATTTGCGCAACTTCAATTTCCTGCTACTTCATTCATTCAGTTTTGTTTTTGAGACCAAAATCTTAGTTGTTGCAAGTTGCAACTGTCTATGACTTGGGAGTTGGGGAGGAAGCGTTTTTGCTAAATTGGATGGCTAAATGGGGATGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGAAGAAGGGGCCTTCTCGCATAAGTGCCACCACGATTATATTCTATACATTGACTCTTGTCATGCTTGTGTTTATCCTGTTTGTAACATACAGACATTGGTCCAACAGGACAAGACTTCAACAAGAGAGATACATATCAGTCTCCGAGGATGAAAATACATCTGTAGAATCCAAAAAATCTGATCTACCTGGATATGCTGTTGTAATTACCTCTAAAGGTTCTATTATAGTAGAACTTTACAAGGAAAGTGCTCCTGAAGTTGTTGATGAATTCATAGATTTATGTCAAAAAGGGCACTTCAAGGGAATGCTTTTTCACCAAGTAATTAAGCACTATGTGATTCAGGGGCCTGGAGCTACTGAAGATTGGAACCTGTTAGGAAAAAAATATGCAAGTATGAGACATGAAGCATTCATGCTTGGAACATCAAAGGGAAAATACTTTAACAAAGTATTTGATCTTTTCATCACAACTGCACCAATACCAGATCTAAATGAAAAGCTTATTGTGTTTGGCCGAGTCATCAAGGGACAGGATATTGTTCAGGAAATTGAAGAAGTGGATACAGATGAGCATTACCAACCAAAAGTTTCCATTGGGATACTTGATGTGGCTCTTAAACAGCTGGAGTGAAGGCATCTCTGCCCGAATCAATGGGATAAATATTTCTCATACTTTGCTGATAGCCTATTGGCTTATTTGTTAAAATCCTTTCTACACAGATGATGAACCTCAAGGATTTCACCTTAGGTTTGTCAATGAAACGTTTGAGCTTTGATGCAGTTTTAGCTACATGTTTCAGTTGCTCATTCAGTGATTATTATGAAATCTCGTTTCTTTCTCCTTTCTATCATATTGTTTGGTCTCTTTTGATGTGGCAGGATGTATGTAGGAATGTCTATTGCAACTTGCCTGGTTGGTGCTATCACCTCTTCTATTTTATTTTGGCATTACTCTTCATTTATAGAGTTTCAATTGATGACTTTTTTAGTCTTTCTGGGCCGAGCCAACCAATATTGGCTTTGTAATCTATTTTGTAATGATGCTCAATTCATATTTTCATTTGGTTATATTAGCGATAATT

>Glyma07g19441.3   sequence type=transcript   gene model=Glyma07g19441   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATGGGTTTTGTTTATTTCCTCTATGTTGAACAAGTTTTGTTTTTGAGACCAAAATCTTAGTTGTTGCAAGTTGCAACTGTCTATGACTTGGGAGTTGGGGAGGAAGCGTTTTTGCTAAATTGGATGGCTAAATGGGGATGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGAAGAAGGGGCCTTCTCGCATAAGTGCCACCACGATTATATTCTATACATTGACTCTTGTCATGCTTGTGTTTATCCTGTTTGTAACATACAGACATTGGTCCAACAGGACAAGACTTCAACAAGAGAGATACATATCAGTCTCCGAGGATGAAAATACATCTGTAGAATCCAAAAAATCTGATCTACCTGGATATGCTGTTGTAATTACCTCTAAAGGTTCTATTATAGTAGAACTTTACAAGGAAAGTGCTCCTGAAGTTGTTGATGAATTCATAGATTTATGTCAAAAAGGGCACTTCAAGGGAATGCTTTTTCACCAAGTAATTAAGCACTATGTGATTCAGGGGCCTGGAGCTACTGAAGATTGGAACCTGTTAGGAAAAAAATATGCAAGTATGAGACATGAAGCATTCATGCTTGGAACATCAAAGGGAAAATACTTTAACAAAGTATTTGATCTTTTCATCACAACTGCACCAATACCAGATCTAAATGAAAAGCTTATTGTGTTTGGCCGAGTCATCAAGGGACAGGATATTGTTCAGGAAATTGAAGAAGTGGATACAGATGAGCATTACCAACCAAAAGTTTCCATTGGGATACTTGATGTGGCTCTTAAACAGCTGGAGTGAAGGCATCTCTGCCCGAATCAATGGGATAAATATTTCTCATACTTTGCTGATAGCCTATTGGCTTATTTGTTAAAATCCTTTCTACACAGATGATGAACCTCAAGGATTTCACCTTAGGTTTGTCAATGAAACGTTTGAGCTTTGATGCAGTTTTAGCTACATGTTTCAGTTGCTCATTCAGTGATTATTATGAAATCTCGTTTCTTTCTCCTTTCTATCATATTGTTTGGTCTCTTTTGATGTGGCAGGATGTATGTAGGAATGTCTATTGCAACTTGCCTGGTTGGTGCTATCACCTCTTCTATTTTATTTTGGCATTACTCTTCATTTATAGAGTTTCAATTGATGACTTTTTTAGTCTTTCTGGGCCGAGCCAACCAATATTGGCTTTGTAATCTATTTTGTAATGATGCTCAATTCATATTTTCATTTGGTTATATTAGCGATAATTGGTTATATTTAAAG
Coding sequences of Glyma07g19441
>Glyma07g19441.1   sequence type=CDS   gene model=Glyma07g19441   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGATGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGAAGAAGGGGCCTTCTCGCATAAGTGCCACCACGATTATATTCTATACATTGACTCTTGTCATGCTTGTGTTTATCCTGTTTGTAACATACAGACATTGGTCCAACAGGACAAGACTTCAACAAGAGAGATACATATCAGTCTCCGAGGATGAAAATACATCTGTAGAATCCAAAAAATCTGATCTACCTGGATATGCTGTTGTAATTACCTCTAAAGGTTCTATTATAGTAGAACTTTACAAGGAAAGTGCTCCTGAAGTTGTTGATGAATTCATAGATTTATGTCAAAAAGGGCACTTCAAGGGAATGCTTTTTCACCAAGTAATTAAGCACTATGTGATTCAGGGGCCTGGAGCTACTGAAGATTGGAACCTGTTAGGAAAAAAATATGCAAGTATGAGACATGAAGCATTCATGCTTGGAACATCAAAGGGAAAATACTTTAACAAAGTATTTGATCTTTTCATCACAACTGCACCAATACCAGATCTAAATGAAAAGCTTATTGTGTTTGGCCGAGTCATCAAGGGACAGGATATTGTTCAGGAAATTGAAGAAGTGGATACAGATGAGCATTACCAACCAAAAGTTTCCATTGGGATACTTGATGTGGCTCTTAAACAGCTGGAGTGA

>Glyma07g19441.2   sequence type=CDS   gene model=Glyma07g19441   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGATGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGAAGAAGGGGCCTTCTCGCATAAGTGCCACCACGATTATATTCTATACATTGACTCTTGTCATGCTTGTGTTTATCCTGTTTGTAACATACAGACATTGGTCCAACAGGACAAGACTTCAACAAGAGAGATACATATCAGTCTCCGAGGATGAAAATACATCTGTAGAATCCAAAAAATCTGATCTACCTGGATATGCTGTTGTAATTACCTCTAAAGGTTCTATTATAGTAGAACTTTACAAGGAAAGTGCTCCTGAAGTTGTTGATGAATTCATAGATTTATGTCAAAAAGGGCACTTCAAGGGAATGCTTTTTCACCAAGTAATTAAGCACTATGTGATTCAGGGGCCTGGAGCTACTGAAGATTGGAACCTGTTAGGAAAAAAATATGCAAGTATGAGACATGAAGCATTCATGCTTGGAACATCAAAGGGAAAATACTTTAACAAAGTATTTGATCTTTTCATCACAACTGCACCAATACCAGATCTAAATGAAAAGCTTATTGTGTTTGGCCGAGTCATCAAGGGACAGGATATTGTTCAGGAAATTGAAGAAGTGGATACAGATGAGCATTACCAACCAAAAGTTTCCATTGGGATACTTGATGTGGCTCTTAAACAGCTGGAGTGA

>Glyma07g19441.3   sequence type=CDS   gene model=Glyma07g19441   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGATGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGAAGAAGGGGCCTTCTCGCATAAGTGCCACCACGATTATATTCTATACATTGACTCTTGTCATGCTTGTGTTTATCCTGTTTGTAACATACAGACATTGGTCCAACAGGACAAGACTTCAACAAGAGAGATACATATCAGTCTCCGAGGATGAAAATACATCTGTAGAATCCAAAAAATCTGATCTACCTGGATATGCTGTTGTAATTACCTCTAAAGGTTCTATTATAGTAGAACTTTACAAGGAAAGTGCTCCTGAAGTTGTTGATGAATTCATAGATTTATGTCAAAAAGGGCACTTCAAGGGAATGCTTTTTCACCAAGTAATTAAGCACTATGTGATTCAGGGGCCTGGAGCTACTGAAGATTGGAACCTGTTAGGAAAAAAATATGCAAGTATGAGACATGAAGCATTCATGCTTGGAACATCAAAGGGAAAATACTTTAACAAAGTATTTGATCTTTTCATCACAACTGCACCAATACCAGATCTAAATGAAAAGCTTATTGTGTTTGGCCGAGTCATCAAGGGACAGGATATTGTTCAGGAAATTGAAGAAGTGGATACAGATGAGCATTACCAACCAAAAGTTTCCATTGGGATACTTGATGTGGCTCTTAAACAGCTGGAGTGA
Predicted protein sequences of Glyma07g19441
>Glyma07g19441.1   sequence type=predicted peptide   gene model=Glyma07g19441   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGMIKPQALLQQSKRKKGPSRISATTIIFYTLTLVMLVFILFVTYRHWSNRTRLQQERYISVSEDENTSVESKKSDLPGYAVVITSKGSIIVELYKESAPEVVDEFIDLCQKGHFKGMLFHQVIKHYVIQGPGATEDWNLLGKKYASMRHEAFMLGTSKGKYFNKVFDLFITTAPIPDLNEKLIVFGRVIKGQDIVQEIEEVDTDEHYQPKVSIGILDVALKQLE*

>Glyma07g19441.2   sequence type=predicted peptide   gene model=Glyma07g19441   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGMIKPQALLQQSKRKKGPSRISATTIIFYTLTLVMLVFILFVTYRHWSNRTRLQQERYISVSEDENTSVESKKSDLPGYAVVITSKGSIIVELYKESAPEVVDEFIDLCQKGHFKGMLFHQVIKHYVIQGPGATEDWNLLGKKYASMRHEAFMLGTSKGKYFNKVFDLFITTAPIPDLNEKLIVFGRVIKGQDIVQEIEEVDTDEHYQPKVSIGILDVALKQLE*

>Glyma07g19441.3   sequence type=predicted peptide   gene model=Glyma07g19441   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGMIKPQALLQQSKRKKGPSRISATTIIFYTLTLVMLVFILFVTYRHWSNRTRLQQERYISVSEDENTSVESKKSDLPGYAVVITSKGSIIVELYKESAPEVVDEFIDLCQKGHFKGMLFHQVIKHYVIQGPGATEDWNLLGKKYASMRHEAFMLGTSKGKYFNKVFDLFITTAPIPDLNEKLIVFGRVIKGQDIVQEIEEVDTDEHYQPKVSIGILDVALKQLE*






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