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Report for Sequence Feature Glyma07g19250

Feature Type:gene_model
Chromosome:Gm07
Start:19128460
stop:19130682
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma07g19250
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G01650AT Annotation by Michelle Graham. TAIR10: Tautomerase/MIF superfamily protein | chr5:242734-244033 REVERSE LENGTH=115 SoyBaseE_val: 7.00E-66ISS
GO:0006954GO-bp Annotation by Michelle Graham. GO Biological Process: inflammatory response SoyBaseN/AISS
GO:0051707GO-bp Annotation by Michelle Graham. GO Biological Process: response to other organism SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG1759 KOG Macrophage migration inhibitory factor JGI ISS
PTHR11954Panther MACROPHAGE MIGRATION INHIBITORY FACTOR RELATED JGI ISS
PTHR11954:SF3Panther MACROPHAGE MIGRATION INHIBITORY FACTOR-RELATED JGI ISS
PF01187PFAM Macrophage migration inhibitory factor (MIF) JGI ISS
UniRef100_B3TLP2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Light-inducible protein ATLS1 n=1 Tax=Elaeis guineensis RepID=B3TLP2_ELAGV SoyBaseE_val: 7.00E-68ISS
UniRef100_C6T069UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T069_SOYBN SoyBaseE_val: 4.00E-76ISS

Expression Patterns of Glyma07g19250
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g19250
ParalogEvidenceComments
Glyma18g43816 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g19250 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g156500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma07g19250
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma07g19250
>Glyma07g19250.1   sequence type=CDS   gene model=Glyma07g19250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGTGCCTCAACCTCTCCACCAACGTTAACCTAGACGGCATCGACACCTCTTCCATTCTCTCCGAAGCCACCTCAACTGTCGCCAGCATCATCGGCAAACCCGAGGCCTATGTGATGATTGTATTGAAAGGATCAGTGCCTATATCTCATGGTGGGAGTGAGCAGCCAGCAGCTTATGGTGAATTGGTGTCCATTGGTGGTCTTAGCCCTGACGTGAACAAGAAACTCAGTGCTGGCATTGCTTCAATTCTCGAAAACAAGTTGTCTGTGCCGAAGTCCCGATTCTACTTGAAGTTTTATGACACTAAGGGTTCCAATTTTGGATGGAATGGATCTACATTCTGA
Predicted protein sequences of Glyma07g19250
>Glyma07g19250.1   sequence type=predicted peptide   gene model=Glyma07g19250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPCLNLSTNVNLDGIDTSSILSEATSTVASIIGKPEAYVMIVLKGSVPISHGGSEQPAAYGELVSIGGLSPDVNKKLSAGIASILENKLSVPKSRFYLKFYDTKGSNFGWNGSTF*






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