Glyma07g18890 - SoyBase

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Report for Sequence Feature Glyma07g18890

Feature Type:	gene_model
Chromosome:	Gm07
Start:	18852618
stop:	18854663
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g18890

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G01550	AT	Annotation by Michelle Graham. TAIR10: lectin receptor kinase a4.1 \| chr5:214517-216583 REVERSE LENGTH=688	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0009738	GO-bp	Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009845	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed germination	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF435	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
PF00139	PFAM	Legume lectin domain	JGI		ISS
UniRef100_G0Y6Q9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Lectin receptor-like kinase n=1 Tax=Gossypium hirsutum RepID=G0Y6Q9_GOSHI	SoyBase	E_val: 0	ISS
UniRef100_I1KKI5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KKI5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g18890

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g18890

Paralog	Evidence	Comments
Glyma18g43570	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g18890 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g154100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g18890

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g18890

Limit To All Plant Sequences

>Glyma07g18890.2   sequence type=CDS   gene model=Glyma07g18890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTCCAACTCTTGTATTTGTCTTCCTCCTATTTCTCTCTCTCTTACCCCAAGTTATTGCCTCCAAGGCTGTGATTTTTGAAGGATTCGATGATGAAAACAGTGAACTCAATCTTGAAGGATCTTCCATCATCAAAACCAGCCGTTTACTTAAACTCACCAACAGATCAACCAATATTGTAGGCCATGCATTCTATGCCACACCCTTCCAAATGCTTAACAACACAAACCAACCCTATGCTTATTCCTTCAGCACCAATTTTGTTTTCTCAATTGTGTCCCCAAGTTCTGGTTCTGGTGGCTTTGGCCTTGCCTTCACCATAGCACCCTCAACACAGTTTCCTGGGGCTGAGGCTGGCCATTATCTTGGCCTTGTTAACTCCACCAATGATGGGAATGAGTCAAACCACATCTTTGCAGTTGAGTTTGACACAATGAATGGTTACAAAGATGACTCAGACACTGAAGGAAACCATGTTGGGGTAAACATCAATGGCATGGACTCAAATATTACTGAACCAGCTGCATACATTAAAGAGGGCACTGATAAGGTAAAGGAAGATTTTAGAATGGCCAAGGTTGATGCTGTCCAAGCTTGGATAGAATATGATGGTGAAAACAAAACTCTGAATGTAACAATAGCTCCTTTGTCAAAACCAAGGCCAAGCAAACCAATTATAAAGAATCATATCATTGATCTTTACAATGTTATGGAGGAAAGCATGTATGTTGGTTTCTCAGCATCAACAGGCCAGGAAACAAGCTCTCACTATCTTCTAGGGTGGAGTTTTGCAGTGAATGGTGTTGCCCCTCAACTGAAAATTTCCAACCTTCCAAATCCACCACCAAAAGAGAAAGAACCGACATCATTTCCTTGGGTCAATATTGCAATTGGCGTCTTGTCTGCTTCGACTTTTTGCCTCTTGTGTATTCTGTTTTGTATAACATGTTATAGGAGATATTATATGGACTTTGAGGTTCTTGAGGACTGGGAGATGGATTGTCCTCACAGGTTTAGGTACAAAGATCTTCACTTAGCCACAAAGGGGTTCATAGAGAGCCATCTCATTGGAGTTGGAGGCTTTGGTGCTGTGTACAAAGGTGTGTTGCCTTCCACGGGAGCTGAGGTTGCTGTCAAGAGGATTGTGAGAAGCCCTTTCCATGGAATGAGGGAATTTGCTGCTGAGATTGAAAGCTTGGGAAGGTTGAGGCACAAGAATTTGGTGAACCTTCAAGGTTGGTGCAACAAAAAGAATGATCTACTCTTGGTCTATGATTTCATCCCAAATGGTAGCCTTGATTATGTCCTATATAAACCCAACAACAACAACTTTGTTTTGAATTGGGGGCAAAGATTCAACATTCTCAAAGGCATTAGTGCTGGACTATTATATTTGCATGAAGAGTGGGAGCAAGTCGTGATCCATAGAGATGTGAAAACTAGCAACATTTTGATAGATGCACACTTGAATGCACGTTTAGGTGACTTTGGACTGGCGAGGCTCTATAACCATGGTCAATTGTCACACACAACAAGTGTGGTTGGCACTATTGGTTACATTGCACCAGAGTTAACTCGCACAGGAAAGGCTTCCACAAGCACAGATGTGTATGCATTTGGGGTTGTGCTCCTTGAAGTTGCCACAGGTAAGAGGCCTCTTGATTCGGATCAGTTTTTCTTGGTGGAGTGGGTTATTGAGAAGTACCACTTGGGTCAAATTCTTGAGGTGGTTGATCCTAAGCTTGATTCACTTTATGATGAGGAAGAAATTGAGTTGGTTCTGAAATTGGGTTTACTTTGCACTCAGCATAGAGCAGATTATAGACCTACCATGAAACAAGTTACAAGGTACTTGAACTTTGATGAACCTCTTCCTGATATTGTTGATTGGGGACATGGTGTTTCTGGGAGCAGTAGATTGAGTTCAGGTTTCTTAGAAGTTACGTATTCTATGGGAACTGTTGAAACATTAGGGTATTTGTCATCCATTAGCATGAGTACTAAGTCCATAGATGCTGGTAGGCAGCAAATAATCATATAG

Predicted protein sequences of Glyma07g18890

Limit To All Plant Sequences

>Glyma07g18890.2   sequence type=predicted peptide   gene model=Glyma07g18890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASPTLVFVFLLFLSLLPQVIASKAVIFEGFDDENSELNLEGSSIIKTSRLLKLTNRSTNIVGHAFYATPFQMLNNTNQPYAYSFSTNFVFSIVSPSSGSGGFGLAFTIAPSTQFPGAEAGHYLGLVNSTNDGNESNHIFAVEFDTMNGYKDDSDTEGNHVGVNINGMDSNITEPAAYIKEGTDKVKEDFRMAKVDAVQAWIEYDGENKTLNVTIAPLSKPRPSKPIIKNHIIDLYNVMEESMYVGFSASTGQETSSHYLLGWSFAVNGVAPQLKISNLPNPPPKEKEPTSFPWVNIAIGVLSASTFCLLCILFCITCYRRYYMDFEVLEDWEMDCPHRFRYKDLHLATKGFIESHLIGVGGFGAVYKGVLPSTGAEVAVKRIVRSPFHGMREFAAEIESLGRLRHKNLVNLQGWCNKKNDLLLVYDFIPNGSLDYVLYKPNNNNFVLNWGQRFNILKGISAGLLYLHEEWEQVVIHRDVKTSNILIDAHLNARLGDFGLARLYNHGQLSHTTSVVGTIGYIAPELTRTGKASTSTDVYAFGVVLLEVATGKRPLDSDQFFLVEWVIEKYHLGQILEVVDPKLDSLYDEEEIELVLKLGLLCTQHRADYRPTMKQVTRYLNFDEPLPDIVDWGHGVSGSSRLSSGFLEVTYSMGTVETLGYLSSISMSTKSIDAGRQQIII*

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