Glyma07g18660 - SoyBase

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Report for Sequence Feature Glyma07g18660

Feature Type:	gene_model
Chromosome:	Gm07
Start:	18694041
stop:	18698218
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g18660

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G51780	AT	Annotation by Michelle Graham. TAIR10: BCL-2-associated athanogene 4 \| chr3:19207029-19208178 REVERSE LENGTH=269	SoyBase	E_val: 3.00E-79	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0010228	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0051087	GO-mf	Annotation by Michelle Graham. GO Molecular Function: chaperone binding	SoyBase	N/A	ISS
KOG4361	KOG	BCL2-associated athanogene-like proteins and related BAG family chaperone regulators	JGI		ISS
PTHR12329	Panther	BCL2-ASSOCIATED ATHANOGENE	JGI		ISS
PTHR12329:SF9	Panther		JGI		ISS
PF00240	PFAM	Ubiquitin family	JGI		ISS
PF02179	PFAM	BAG domain	JGI		ISS
UniRef100_G7KSC2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: BAG-domain protein 1 / regulator of cell death n=2 Tax=Medicago truncatula RepID=G7KSC2_MEDTR	SoyBase	E_val: 1.00E-91	ISS
UniRef100_I1KKI1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KKI1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g18660

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g18660

Paralog	Evidence	Comments
Glyma18g43530	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g18660 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g153700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g18660

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g18660

Limit To All Plant Sequences

>Glyma07g18660.4   sequence type=transcript   gene model=Glyma07g18660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTATCGCCAAATAATTGGTGGGTGTTTCCGAGAAGAGGAAGACAATTGAAATTGAAATTGAAAGTGGATGACATTGCCAGTAGCAGCCACCGTTCTTTAAGAAAAAGTGATTTTTTTTTTTTTCATTACAATTACAAGGCTGAATTTGTGATTCCAATTTCCACATATTATTAGATCTCTCCATGGAGTGGGAGATGAGGCCCGGCGGCATGTTCGTTCAGAGACGCGAGGCAGCGGCGGATAACGGCGGCGGCGGCAACGGCAACATGACGACGACGGTGTTGATCACTGTCGTCCACGCTTCCTCCCACTACGACCTCCACCTCCCTACCAACTCCACTTTCTGGGATGTTAAGAGTCTGCTTGTACATAGAACTGGTTTACAGCCTGAAGAGCAACAACTCTTCTTTGGAGGAAAAGAAAAGGACAATGAAGATAATTTGCATGAGGAAGGTGTGAGGGACAAGTCAAAGCTTTTGCTTTTGGAGGATGCTTCTAGTGAAGAGAGGAAACGCGAGGAAATTAGAAAACACAATGAAATGTTAAAGGCTTCTGAAGCTGTTGCTGAAGTCAGAGCAGAGGTGGATAAGCTCGCTGAGAGGGTATCTGTCTTGGAAGTGGCTGTGGATGGAGGGACCAGGGTTTCTGACAAAGAGTTTTTGATGTCCACAGAGTTGCTTATGAGGCAATTGCTGAAACTGGATAGTATTGAGGCTGAAGGTGAAGTAAAGCTGCAGAGAAAAGCTGAGGTGCGTCGAGTGCAGAACTTTGTAGATACACTAGATTCTCTGAAGGCAAAGAACTCCAATCCTTTTACCCCCATTGGTAAAGCTGTCTCTGTAGCAACCCAATGGGAGACCTTTGACTCTGGAATGGGAAGCTTGAATGCCCCTACCTCAATGTCATCTTCTAGAAATGTAAGTCAAGATTGGGAGCGGCTTGATTAGCTAAGAAATTTCTATGTAACATAAAACGACAAAGCATATAGAACACCATATTTTTAGACCTTGATTCCTCAATCAAGGTTGAATTTTTTGTAGTTTGCTGAAGACAAAATATCTGTAAACCATTTGACTGCCTTAGGGGGCATACTTTGAAGTTAGAATTTGGAATGAAGAAGAAAATGGAGGAGCATAATCTGGTTATTCCTTTACATAAATCCTTCCATGAAATTTGGAGAGTGTATCCATTGTCAGTTCTGATATGCACTGAAAAGATTGTTGATAGCAAGTACACTACAACCATTGTTTGATAAAAGTCAGAACTTAGTCCATTTCATTCACTCTTGAATTTAAGGCTGGATATATGGTAAAAGACTTAGAGTTTATTTTAATATTTTCTTGTCAAATTAATCCAAGAACAAGA

Coding sequences of Glyma07g18660

Limit To All Plant Sequences

>Glyma07g18660.3   sequence type=CDS   gene model=Glyma07g18660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTGGGAGATGAGGCCCGGCGGCATGTTCGTTCAGAGACGCGAGGCAGCGGCGGATAACGGCGGCGGCGGCAACGGCAACATGACGACGACGGTGTTGATCACTGTCGTCCACGCTTCCTCCCACTACGACCTCCACCTCCCTACCAACTCCACTTTCTGGGATGTTAAGAGTCTGCTTGTACATAGAACTGGTTTACAGCCTGAAGAGCAACAACTCTTCTTTGGAGGAAAAGAAAAGGACAATGAAGATAATTTGCATGAGGAAGGTGTGAGGGACAAGTCAAAGCTTTTGCTTTTGGAGGATGCTTCTAGTGAAGAGAGGAAACGCGAGGAAATTAGAAAACACAATGAAATGTTAAAGGCTTCTGAAGCTGTTGCTGAAGTCAGAGCAGAGGTGGATAAGCTCGCTGAGAGGGTATCTGTCTTGGAAGTGGCTGTGGATGGAGGGACCAGGGTTTCTGACAAAGAGTTTTTGATGTCCACAGAGTTGCTTATGAGGCAATTGCTGAAACTGGATAGTATTGAGGCTGAAGGTGAAGTAAAGCTGCAGAGAAAAGCTGAGGTGCGTCGAGTGCAGAACTTTGTAGATACACTAGATTCTCTGAAGGCAAAGAACTCCAATCCTTTTACCCCCATTGGTAAAGCTGTCTCTGTAGCAACCCAATGGGAGACCTTTGACTCTGGAATGGGAAGCTTGAATGCCCCTACCTCAATGTCATCTTCTAGAAATGTAAGTCAAGATTGGGAGCGGCTTGATTAG

>Glyma07g18660.4   sequence type=CDS   gene model=Glyma07g18660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTGGGAGATGAGGCCCGGCGGCATGTTCGTTCAGAGACGCGAGGCAGCGGCGGATAACGGCGGCGGCGGCAACGGCAACATGACGACGACGGTGTTGATCACTGTCGTCCACGCTTCCTCCCACTACGACCTCCACCTCCCTACCAACTCCACTTTCTGGGATGTTAAGAGTCTGCTTGTACATAGAACTGGTTTACAGCCTGAAGAGCAACAACTCTTCTTTGGAGGAAAAGAAAAGGACAATGAAGATAATTTGCATGAGGAAGGTGTGAGGGACAAGTCAAAGCTTTTGCTTTTGGAGGATGCTTCTAGTGAAGAGAGGAAACGCGAGGAAATTAGAAAACACAATGAAATGTTAAAGGCTTCTGAAGCTGTTGCTGAAGTCAGAGCAGAGGTGGATAAGCTCGCTGAGAGGGTATCTGTCTTGGAAGTGGCTGTGGATGGAGGGACCAGGGTTTCTGACAAAGAGTTTTTGATGTCCACAGAGTTGCTTATGAGGCAATTGCTGAAACTGGATAGTATTGAGGCTGAAGGTGAAGTAAAGCTGCAGAGAAAAGCTGAGGTGCGTCGAGTGCAGAACTTTGTAGATACACTAGATTCTCTGAAGGCAAAGAACTCCAATCCTTTTACCCCCATTGGTAAAGCTGTCTCTGTAGCAACCCAATGGGAGACCTTTGACTCTGGAATGGGAAGCTTGAATGCCCCTACCTCAATGTCATCTTCTAGAAATGTAAGTCAAGATTGGGAGCGGCTTGATTAG

Predicted protein sequences of Glyma07g18660

Limit To All Plant Sequences

>Glyma07g18660.3   sequence type=predicted peptide   gene model=Glyma07g18660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEWEMRPGGMFVQRREAAADNGGGGNGNMTTTVLITVVHASSHYDLHLPTNSTFWDVKSLLVHRTGLQPEEQQLFFGGKEKDNEDNLHEEGVRDKSKLLLLEDASSEERKREEIRKHNEMLKASEAVAEVRAEVDKLAERVSVLEVAVDGGTRVSDKEFLMSTELLMRQLLKLDSIEAEGEVKLQRKAEVRRVQNFVDTLDSLKAKNSNPFTPIGKAVSVATQWETFDSGMGSLNAPTSMSSSRNVSQDWERLD*

>Glyma07g18660.4   sequence type=predicted peptide   gene model=Glyma07g18660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEWEMRPGGMFVQRREAAADNGGGGNGNMTTTVLITVVHASSHYDLHLPTNSTFWDVKSLLVHRTGLQPEEQQLFFGGKEKDNEDNLHEEGVRDKSKLLLLEDASSEERKREEIRKHNEMLKASEAVAEVRAEVDKLAERVSVLEVAVDGGTRVSDKEFLMSTELLMRQLLKLDSIEAEGEVKLQRKAEVRRVQNFVDTLDSLKAKNSNPFTPIGKAVSVATQWETFDSGMGSLNAPTSMSSSRNVSQDWERLD*

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