|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT5G01310 | AT | Annotation by Michelle Graham. TAIR10: APRATAXIN-like | chr5:125304-128960 FORWARD LENGTH=912 | SoyBase | E_val: 1.00E-26 | ISS |
GO:0006259 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA metabolic process | SoyBase | N/A | ISS |
GO:0006310 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA recombination | SoyBase | N/A | ISS |
GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
GO:0006396 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA processing | SoyBase | N/A | ISS |
GO:0006790 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sulfur compound metabolic process | SoyBase | N/A | ISS |
GO:0007062 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion | SoyBase | N/A | ISS |
GO:0007131 | GO-bp | Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination | SoyBase | N/A | ISS |
GO:0009150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: purine ribonucleotide metabolic process | SoyBase | N/A | ISS |
GO:0010332 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to gamma radiation | SoyBase | N/A | ISS |
GO:0010413 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process | SoyBase | N/A | ISS |
GO:0022402 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell cycle process | SoyBase | N/A | ISS |
GO:0032204 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of telomere maintenance | SoyBase | N/A | ISS |
GO:0033044 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of chromosome organization | SoyBase | N/A | ISS |
GO:0042138 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic DNA double-strand break formation | SoyBase | N/A | ISS |
GO:0043247 | GO-bp | Annotation by Michelle Graham. GO Biological Process: telomere maintenance in response to DNA damage | SoyBase | N/A | ISS |
GO:0045132 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation | SoyBase | N/A | ISS |
GO:0045492 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process | SoyBase | N/A | ISS |
GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
GO:0047627 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: adenylylsulfatase activity | SoyBase | N/A | ISS |
PTHR12565 | Panther | STEROL REGULATORY ELEMENT-BINDING PROTEIN | JGI | ISS | |
PF00010 | PFAM | Helix-loop-helix DNA-binding domain | JGI | ISS | |
UniRef100_G7KSC0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: LAX n=1 Tax=Medicago truncatula RepID=G7KSC0_MEDTR | SoyBase | E_val: 3.00E-41 | ISS |
UniRef100_I1KG08 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1KG08_SOYBN | SoyBase | E_val: 2.00E-80 | ISS |
Glyma07g18651 not represented in the dataset |
Glyma07g18651 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.07g153600 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g18651.1 sequence type=CDS gene model=Glyma07g18651 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGTGCATCAATAACCCTACCTCTTGTGAAGGGTCATCATCATCTTCCAAGCACCCCAACAAGAGCAATAGGGAGAAAAAAGGTGTGAGGAAAAGTAACAAAGGAGGAGGAGGAGGAGTGAGGCTTTCCACTGATCCACAAAGCGTGGCAGCCAGAGAAAGAAGGCACAGAATCAGTGACAGGTTCAAGATCCTTCAGAGCATGGTCCCTGGTGGGAGCAAGATGGACACTGTTTCCATGTTGGAGTGTGCCATTCACTACGTCAAGTTCCTCCAGACAGAGATTTTGCTCCACCAAGCATTGATAGACTTTGTAGATGTTGATCATCATGAGTCTCCACTGTTCCTCCCCGCAGAGTATAATAATTTCCCTGATGAACACTCCAATATTTCCCTTCAGCAAAACCCTTCTTCAGTTTCGGTGCATTCTCATCATCATCAGCAGAGTTTACCACAGCTACCACTGTCACAGTGCTACTTTCAAGGTGAAGAAGATTTTAACACCTTTGATGCCATCATGCCACCATGA
>Glyma07g18651.1 sequence type=predicted peptide gene model=Glyma07g18651 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MECINNPTSCEGSSSSSKHPNKSNREKKGVRKSNKGGGGGVRLSTDPQSVAARERRHRISDRFKILQSMVPGGSKMDTVSMLECAIHYVKFLQTEILLHQALIDFVDVDHHESPLFLPAEYNNFPDEHSNISLQQNPSSVSVHSHHHQQSLPQLPLSQCYFQGEEDFNTFDAIMPP*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||