Glyma07g18640 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma07g18640

Feature Type:	gene_model
Chromosome:	Gm07
Start:	18679976
stop:	18682822
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g18640

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G33060	AT	Annotation by Michelle Graham. TAIR10: receptor like protein 27 \| chr2:14025661-14028087 FORWARD LENGTH=808	SoyBase	E_val: 1.00E-118	ISS
GO:0006952	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response	SoyBase	N/A	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
KOG0472	KOG	Leucine-rich repeat protein	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF473	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00560	PFAM	Leucine Rich Repeat	JGI		ISS
UniRef100_C6ZRY7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Disease resistance protein n=1 Tax=Glycine max RepID=C6ZRY7_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1KKH8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KKH8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g18640

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g18640

Paralog	Evidence	Comments
Glyma18g43510	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g18640 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g153500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g18640

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g18640

Limit To All Plant Sequences

>Glyma07g18640.2   sequence type=CDS   gene model=Glyma07g18640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGGTGTAAGTGTATCAGCTCAGGGAAATGAATGGTGCAATGCTTTGTTGCAGCTGCATAGCCTGCAGGAGCTAGGCATGTCAAACTGCAATCTTTCTGGGCCCCTTGATCCTTTGCTGACAAGACTTGAGAATCTATCAGTCATTCGTCTTGATCAGAACAATTTATCATCCTCAGTGCCAGAAACCTTTGCTGATTTTCAAAATTTGACAACCCTTCACCTTAGTTCTTGTGAATTGACAGGAATATTTCCAGATAAGATCTTTAAGGTAGCAACGTTGTCTGATATAGACTTATCATTCAATTATCATCTATATGGATCTTTGCCTGAATTCTCAGTTAATGGTCCTCTTCGGACATTGATTGTAAGGGACACAGAGTTCTCAGGGTCAATACCAGCTTCTATAAATAATCTTAGGCAGTTATTCGTCATAGATACTTCTAATTGCTATTTCAATGGAACACTGTCGAGTTCAATGTCAAGACTCAGGGAACTCACTTATCTGGATTTGTCATTTAATGACTTCATTGGTCCAATTCCGTCCTTGAATATGTCCAGGAATCTCGTGTATTTAGACCTCTCACACAATGATTTCACAGGTTCAATCACTTCTGTTCACTTGGAAGGCTTACCAAAACTGGTCCAATTTGATTTGCAGGACAACTTCCTCAATGGAAACCTTCCTTCGTCAATTTTCTCTCTCTCATTGCTACAAAGTATACAACTTTCCAACAACAACTTTCAGGGTCAGTTGAATAAATTTTTAAATATCTCTTCCTCCGTGTTAGAGATCCTTGATTTAAGTAGTAACGATTTAGAAGGGCCCATTCCTACAGATATCTTTAGTCTCAGATCACTTAATGTCCTCAGACTATCTTCAAACAGGTTAAATGGCACATTGAAGCTAGATGTGATTCAGCAACTTGAAAATCTAACTACATTATCTCTTTCACACAACGAATTGTCAATAGACATGAATGTTACAGATAGAAATCAGACACAAATAACAACTTTAGACCTCTCAAGCAACTATATTCAAGGATCTATACCAACATGGATTTGGCAACTTGACTCTCTTGTTCAACTAAATCTTTCTCACAATTTGCTCATAAATTTAGAAGGAGCTGCGCAGAACACTAGTTCCAATTTGAGGCTCCTTGACCTCAAATCTAACCAACTCCAAGGGAAGCTTCCTATATTTCCAAAGAATATAATTTATTTGGACTATTCAAGCAATAACATTTGTTTCACTATTCCATCAAATGTTGGTACTTATCTGTCTTCCATAATTTTCCTGTCTCTTTCCAATAACAGTTTATCTGGGAATATTCCTCATTCCTTGTGCAATAATTCAAATCTGCTAGTTCTGGATGTTTCCTATAATCAGTTCAATGGGAAAATTCCGGAGTGCTTAACACAGAGTGACACACTTGTGGTATTAAATCTGCAACATAACCAGTTCAATGGCAGCATTCCAGATAAATTTCCACTATCTTGTGCTTTAAAGACTCTGGATCTCAATAGTAATCTATTGAGGGGCCCAATTCCCAAATCTCTAGCAAATTGCACATCATTAGAGGTGTTGGATCTTGGAAACAATCAGGTAGATGATGGATTTCCATGCTTCTTAAAAACAATATCCACACTGTGTGTCATGGTTTTGAGGGGAAACAAATTTCATGGGCACATTGGATGCTCTCATACTAATAGTACTTGGCATATGCTTCAAATTGTTGATGTGGCTTTCAACAATTTCAGTGGTTTACTTCCAGCAAAATGCTTCAAAACTTGGAAGGCAATGATGCTTGACGAATATCATGATGGATCAAAGCTCATTCGCATTGGATCTCAAGTCCTTATATATAGTGGTATATATTATCAGGATTCTGTGATACTTACAAGCAAAGGTTTACAGATGGAGTTTGTTAAAATCCTAAGTATCTTCACATCTGTTGACTTCTCATCCAATAATTTTGAAGGAACGATACCAGAAGAGCTTATGAATTTTACAAGACTTATTTTTCTCAACTTGTCACATAATGCTTTAGCAGGCCAAATCCCTTCATCTATAGGGAATTTAATACAGCTTGAATCATTGGACCTGTCTAGAAACCGTTTTGATGGAGAAATTCCCTCGCAGCTTGCAAGTTTAAACTTCCTCTCATACCTAAACCTTTCCTATAATCGTCTGGTTGGAAAAATCCCTGTAGGTACACAGCTTCAATCATTTGATGCATCTTCCTATGCTGGAAATGCAGAATTATGTGGAGTTCCTTTGCCTAAAAATTGCTCTGATATGAGCAATGCAGAAGAAAAAGTGCCTGAAGTACATACAGATTTTGGAGTTAAGTTTGACTGGACTTATGTATCAATAGGAGTGGGTTTTGGCGTTGGAGCAGGATTGGTTGTAGCTCCATCATTGTTTTTGGAGATTCTGAAAAAATGGAGCAACCATAAAATTGATAAAGTTCTCCTTGTCGTTCTTCCAATGTTTGGTTTAACTTGGATACCCATTGATGATGATGAAGCAGAGGAAGATACTGAAGAAAATAACTCGGACATGGAAGAGGAGTGTGACTACAATGAGGAACAAACTATTTTGTGCCATCAAAGGTTTCAAGGGCGGTATTGTGTCTTGTGTTCCAAGCTTGATATCCGTAAGAAGAAGGTAATTCACGACCCAAGGTGTACATGTTACCCCTCACCACCCATTTCAACATCAACTTATCCAGATTCATATTCTTCTCATTCACACGCATGA

Predicted protein sequences of Glyma07g18640

Limit To All Plant Sequences

>Glyma07g18640.2   sequence type=predicted peptide   gene model=Glyma07g18640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDGVSVSAQGNEWCNALLQLHSLQELGMSNCNLSGPLDPLLTRLENLSVIRLDQNNLSSSVPETFADFQNLTTLHLSSCELTGIFPDKIFKVATLSDIDLSFNYHLYGSLPEFSVNGPLRTLIVRDTEFSGSIPASINNLRQLFVIDTSNCYFNGTLSSSMSRLRELTYLDLSFNDFIGPIPSLNMSRNLVYLDLSHNDFTGSITSVHLEGLPKLVQFDLQDNFLNGNLPSSIFSLSLLQSIQLSNNNFQGQLNKFLNISSSVLEILDLSSNDLEGPIPTDIFSLRSLNVLRLSSNRLNGTLKLDVIQQLENLTTLSLSHNELSIDMNVTDRNQTQITTLDLSSNYIQGSIPTWIWQLDSLVQLNLSHNLLINLEGAAQNTSSNLRLLDLKSNQLQGKLPIFPKNIIYLDYSSNNICFTIPSNVGTYLSSIIFLSLSNNSLSGNIPHSLCNNSNLLVLDVSYNQFNGKIPECLTQSDTLVVLNLQHNQFNGSIPDKFPLSCALKTLDLNSNLLRGPIPKSLANCTSLEVLDLGNNQVDDGFPCFLKTISTLCVMVLRGNKFHGHIGCSHTNSTWHMLQIVDVAFNNFSGLLPAKCFKTWKAMMLDEYHDGSKLIRIGSQVLIYSGIYYQDSVILTSKGLQMEFVKILSIFTSVDFSSNNFEGTIPEELMNFTRLIFLNLSHNALAGQIPSSIGNLIQLESLDLSRNRFDGEIPSQLASLNFLSYLNLSYNRLVGKIPVGTQLQSFDASSYAGNAELCGVPLPKNCSDMSNAEEKVPEVHTDFGVKFDWTYVSIGVGFGVGAGLVVAPSLFLEILKKWSNHKIDKVLLVVLPMFGLTWIPIDDDEAEEDTEENNSDMEEECDYNEEQTILCHQRFQGRYCVLCSKLDIRKKKVIHDPRCTCYPSPPISTSTYPDSYSSHSHA*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain