SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G28240 | AT | Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF616) | chr1:9868521-9871798 REVERSE LENGTH=581 | SoyBase | E_val: 1.00E-133 | ISS |
| GO:0006672 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ceramide metabolic process | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0016757 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups | SoyBase | N/A | ISS |
| PTHR12956 | Panther | ALKALINE CERAMIDASE-RELATED | JGI | ISS | |
| PTHR12956:SF1 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF04765 | PFAM | Protein of unknown function (DUF616) | JGI | ISS | |
| UniRef100_I1M235 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M235_SOYBN | SoyBase | E_val: 3.00E-170 | ISS |
| UniRef100_Q9FZ97 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: F3H9.11 protein n=1 Tax=Arabidopsis thaliana RepID=Q9FZ97_ARATH | SoyBase | E_val: 5.00E-131 | ISS |
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Glyma07g18623 not represented in the dataset |
Glyma07g18623 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g153400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g18623.1 sequence type=CDS gene model=Glyma07g18623 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACAGCATGCCCAGTATGTTACCTTCCCGTGGATGAAGCCATTGCACTTATGCCTAAGCTTCCGTCACCTTCTCCAGTACTTAAGAACTTAGCATTTATCTATGAGGAAACTCTTAGCAGGAATGGTGAATTTGGTGGTTCGAACTTTGGTGGATATCCTATTTTGAGGCAAAGAAATGAATCTTTTGATATAGGAACTAAACCTGATCACAACACAGGATTTGACATGGATGAAGATGACCTCATTGAAATGGAGCAGTGTCACGACGTAGTTGATGCATTAGCCATATTTGGAAATTTTGATGAGATAAACGACCCAACAAATATAAGTGATTATTCAAAGGAGACAATATGCTTCCTTATGTTTGTAGATGAAGAAATAGAGTCTAATTTGAGGAGTTCTGCCAGGCTGGGGACCAGAAAGAAGATTGGTTTGTGGAGAATTATTGTTTCTCATAATCTTCCTTATACAGATCCAAGAGGCACAGGGAAGATTCCAAAGCTTCTGTTGCATAGAATGGTTCCAAATGCCCACTATTCTATATGGCTTGATAGAAAGCTTGAGCTTCTTGTTGATCCATATCAAATCCTTGAAAGACTTTTGTGGAGGAAGAATGCAATTTTTGCAATATCTAAACATTATAGATGCTTTGATGTATTTGTTGAGGCCGAAGCAAATAAAGCTGCTGGAAAGTATGAGAATGCCTCTATTGACTTTCAGAATGACTTTTACAAGAATGAAGGACTAACTCCATATGCAGAGGCCAAACTTCCTTTTATAAGTGATGTTCCTGAAGGATGTGTAATAGTATGA
>Glyma07g18623.1 sequence type=predicted peptide gene model=Glyma07g18623 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTACPVCYLPVDEAIALMPKLPSPSPVLKNLAFIYEETLSRNGEFGGSNFGGYPILRQRNESFDIGTKPDHNTGFDMDEDDLIEMEQCHDVVDALAIFGNFDEINDPTNISDYSKETICFLMFVDEEIESNLRSSARLGTRKKIGLWRIIVSHNLPYTDPRGTGKIPKLLLHRMVPNAHYSIWLDRKLELLVDPYQILERLLWRKNAIFAISKHYRCFDVFVEAEANKAAGKYENASIDFQNDFYKNEGLTPYAEAKLPFISDVPEGCVIV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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