Glyma07g18570 - SoyBase

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Report for Sequence Feature Glyma07g18570

Feature Type:	gene_model
Chromosome:	Gm07
Start:	18594297
stop:	18597627
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g18570

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G33070	AT	Annotation by Michelle Graham. TAIR10: Thiamine pyrophosphate dependent pyruvate decarboxylase family protein \| chr4:15952519-15954676 REVERSE LENGTH=607	SoyBase	E_val: 0	ISS
GO:0001666	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hypoxia	SoyBase	N/A	ISS
GO:0006094	GO-bp	Annotation by Michelle Graham. GO Biological Process: gluconeogenesis	SoyBase	N/A	ISS
GO:0007010	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization	SoyBase	N/A	ISS
GO:0009862	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0010310	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process	SoyBase	N/A	ISS
GO:0010498	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasomal protein catabolic process	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0000287	GO-mf	Annotation by Michelle Graham. GO Molecular Function: magnesium ion binding	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004737	GO-mf	Annotation by Michelle Graham. GO Molecular Function: pyruvate decarboxylase activity	SoyBase	N/A	ISS
GO:0016740	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity	SoyBase	N/A	ISS
GO:0016831	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carboxy-lyase activity	SoyBase	N/A	ISS
GO:0030976	GO-mf	Annotation by Michelle Graham. GO Molecular Function: thiamine pyrophosphate binding	SoyBase	N/A	ISS
KOG1184	KOG	Thiamine pyrophosphate-requiring enzyme	JGI		ISS
PTHR18968	Panther	THIAMINE PYROPHOSPHATE ENZYMES	JGI		ISS
PTHR18968:SF4	Panther	2-SUCCINYL-6-HYDROXY-2,4-CYCLOHEXADIENE-1-CARBOXYLATE SYNTHASE	JGI		ISS
PF00205	PFAM	Thiamine pyrophosphate enzyme, central domain	JGI		ISS
PF02775	PFAM	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain	JGI		ISS
PF02776	PFAM	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain	JGI		ISS
UniRef100_Q84V95	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pyruvate decarboxylase 1 n=1 Tax=Lotus corniculatus RepID=Q84V95_LOTCO	SoyBase	E_val: 0	ISS
UniRef100_UPI0001D62D21	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0001D62D21 related cluster n=1 Tax=unknown RepID=UPI0001D62D21	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g18570

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g18570

Paralog	Evidence	Comments
Glyma18g43460	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g18570 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g153100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g18570

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g18570

Limit To All Plant Sequences

>Glyma07g18570.1   sequence type=CDS   gene model=Glyma07g18570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACACCAGGATAGGTTCACTCGACGCGGCCAAGCCCGCCTGCAACGACGTCGTATCGTGCAACCACACCACCAGCGCCGCCATCCAGCCCTGCGTGCCGGCGACGGTGATCAACGGCGCCGGCGGAGACTCCACTTTAGGCGGCCACCTGGCACGCCGGCTGGTCGAAATCGGCGTCACCGACGTGTTCTCCGTTCCCGGGGACTTCAACCTGACGCTGCTGGACCACCTGATCGCAGAGCCGGCGCTGAACCTGGTCGGGTGCTGCAATGAGCTCAACGCCGGGTACGCCGCCGATGGCTACGCGCGCGCCAGGGGAGTCGGCGCGTGCGTGGTGACTTTCACCGTCGGCGGGCTTAGCGTGCTCAACGCCATCGCCGGAGCGTACAGCGAGAATTTGCCGCTGATTTGCATCGTCGGTGGGCCCAACTCCAACGACTACGGCACCAGTCGGATCCTCCACCACACCATCGGGTTACCCGATTTCAGCCAGGAGTTGAGGTGCTTCCAGACCATTACTTGCTTCCAGGCTGTGGTGAATAACTTGGAAGATGCTCATGAGTTGATTGATACAGCAATCTCAACTGCACTGAAAGAAAGCAAGCCGGTGTATATAAGCATTAGCTGTAACTTGCCTGGGATTCCTCACCCCACTTTCAGTCGTGATCCTGTTCCTTTTTCGTTATCTCCAAGATTGAGTAACAAGATGGGGTTGGAGGCTGCAGTGGAGGCAGCGGCAGAATTCCTTAACAAGGCAGTGAAACCAGTGCTGGTGGGTGGTCCTAAACTGAGGGTGGCAACGGCATCTGATGCCTTTGTTGAACTGGCTGATGCGTGTGGTTATGCGCTTGCTGTGATGCCATCGGCTAAAGGGCAGGTTCCAGAGCACCATCCCCATTTCATCGGAACTTATTGGGGTGCTGTGAGCACTGCCTTCTGTGCTGAGATTGTGGAGTCTGCGGATGCGTACTTGTTTGCTGGTCCCATTTTTAATGACTACAGCTCTGTGGGGTATTCGCTCCTTCTCAAGAAGGAGAAGGCGATCATTGTGCAGCCTGATCGGGTGGTGATCGCAAATGGACCTGCATTTGGTTGTGTGCTGATGAAGGATTTCCTTAAGGCACTTGCAAAGCGCCTCAAGCACAACAATACTGCATATGAAAATTACCACAGGATATTTGTCCCTGAAGGACATCCTTTGAAGGCTACACCCAGAGAGCCTTTGAGGGTTAATGTTCTTTTCCAACATATACAGAAGATGCTGTCTGGTGAAACTGCTGTAATTGCTGAGACAGGGGATTCCTGGTTTAACTGCCAAAAGCTGAAATTGCCAAAGGGATGTGGGTATGAGTTCCAAATGCAATATGGTTCAATTGGATGGTCTGTTGGTGCTACTCTTGGTTATGCTCAGGCTGTTCCTGAGAAGCGAGTGATTGCCTGCATTGGTGATGGAAGTTTTCAGGTGACTGCCCAAGATGTATCAACAATGTTGCGGTGTGGGCAAAAGACCATCATCTTTCTGGTCAACAATGGCGGATACACCATTGAGGTTGAAATTCATGATGGGCCATACAATGTGATTAAGAACTGGAACTACACTGGGTTGATTGATGCAATCCACAATGGTGAAGGGAAATGCTGGACTGCCAAGGTGTTCTGTGAAGAGGAGCTAGTTGAAGCAATTGCCACAGCCACAGGACACAAGAGAGACTCCTTATGCTTCATTGAGGTGATTGTTCACAAGGATGACACCAGCAAAGAATTGCTTGAATGGGGCTCACGAGTCTCTGCTGCCAATAGCCGTCCCCCCAATCCTCAGTAA

Predicted protein sequences of Glyma07g18570

Limit To All Plant Sequences

>Glyma07g18570.1   sequence type=predicted peptide   gene model=Glyma07g18570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDTRIGSLDAAKPACNDVVSCNHTTSAAIQPCVPATVINGAGGDSTLGGHLARRLVEIGVTDVFSVPGDFNLTLLDHLIAEPALNLVGCCNELNAGYAADGYARARGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTSRILHHTIGLPDFSQELRCFQTITCFQAVVNNLEDAHELIDTAISTALKESKPVYISISCNLPGIPHPTFSRDPVPFSLSPRLSNKMGLEAAVEAAAEFLNKAVKPVLVGGPKLRVATASDAFVELADACGYALAVMPSAKGQVPEHHPHFIGTYWGAVSTAFCAEIVESADAYLFAGPIFNDYSSVGYSLLLKKEKAIIVQPDRVVIANGPAFGCVLMKDFLKALAKRLKHNNTAYENYHRIFVPEGHPLKATPREPLRVNVLFQHIQKMLSGETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQAVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLVNNGGYTIEVEIHDGPYNVIKNWNYTGLIDAIHNGEGKCWTAKVFCEEELVEAIATATGHKRDSLCFIEVIVHKDDTSKELLEWGSRVSAANSRPPNPQ*

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