Glyma07g18460 - SoyBase

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Report for Sequence Feature Glyma07g18460

Feature Type:	gene_model
Chromosome:	Gm07
Start:	18402733
stop:	18406378
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g18460

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G08950	AT	Annotation by Michelle Graham. TAIR10: electron transport SCO1/SenC family protein \| chr3:2727285-2729289 FORWARD LENGTH=334	SoyBase	E_val: 1.00E-131	ISS
GO:0006626	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion	SoyBase	N/A	ISS
GO:0006825	GO-bp	Annotation by Michelle Graham. GO Biological Process: copper ion transport	SoyBase	N/A	ISS
GO:0006878	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular copper ion homeostasis	SoyBase	N/A	ISS
GO:0008535	GO-bp	Annotation by Michelle Graham. GO Biological Process: respiratory chain complex IV assembly	SoyBase	N/A	ISS
GO:0009790	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development	SoyBase	N/A	ISS
GO:0019243	GO-bp	Annotation by Michelle Graham. GO Biological Process: methylglyoxal catabolic process to D-lactate	SoyBase	N/A	ISS
GO:0033617	GO-bp	Annotation by Michelle Graham. GO Biological Process: mitochondrial respiratory chain complex IV assembly	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005507	GO-mf	Annotation by Michelle Graham. GO Molecular Function: copper ion binding	SoyBase	N/A	ISS
KOG2792	KOG	Putative cytochrome C oxidase assembly protein	JGI		ISS
PTHR12151	Panther	SCO1/SENC	JGI		ISS
PF02630	PFAM	SCO1/SenC	JGI		ISS
UniRef100_D7L7P7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Electron transport SCO1/SenC family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7L7P7_ARALL	SoyBase	E_val: 3.00E-129	ISS
UniRef100_I1KKG6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KKG6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g18460

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g18460

Paralog	Evidence	Comments
Glyma16g19320	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Glyma18g43300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g18460 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g152200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g18460

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g18460

Limit To All Plant Sequences

>Glyma07g18460.2   sequence type=transcript   gene model=Glyma07g18460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCAACTACTAAACCCTGGTCCTTTGTCTGCGATGGTTTAAGGTTAAGGTTTTCACATAATTCCTCTAATGGCGTACATCGTATCCAGCAAGGTTAACCAATTTCGCTATTCCACGCGCCTTCTCTTCTCACACCTTCTTCGCCATGGCAGACCCTCCACGCTTTTACCACCCTTCTCTTCTCATCTTCAACCACTCCATCACCCTCACCAGGTTGGGAATCAAGGTTATGGAAATGGGTCGTTGGGGTTGTGCCCAAGGCTTCTATCTTCTTCTTCTTCTTCTGATGCTTCTGCTGCTAATGTTAGTGGAGAAAAACCAGCATTGGATTCAGATCAATCTGCAAAAGATGGTTCTGGCAAAGAGAGAGAGTCTGGGAGTGGAGGAGGACAGGATCAGAAAAGTGATGCTGGGAAATCTGTTCGTGGAGGGCCTGTTTCTTGGTTGAGCTTTCTCTTGTTGGTTCTCACTGGAGCTGGACTAGTGTTCTACTACGACAGGGAAAAGAAACGACATATCGAAGGGATACGTACTAATACGGAGGCTGTTAAGCAGGGACCTTCTGCAGGAAAAGCTGCAATTGGGGGTCCATTTTGCCTTATCAACCATCACGGAAAACATGTAACTGAAAAGGATTTCATGGGAAAGTGGACTTTGTTATATTTTGGCTTTACTCACTGCCCGGATATCTGTCCAGAGGAACTACAGAAGTTAGCAGCTGCTGTTGATAAAATAAAGGAGAAAGCTGGAATTGAAACTGTTCCGGTTTTTATCTCTGTTGATCCTGAGAGGGATACTGTTGAACAAGTCGGTGAATATGTCAAAGAATTTCATCCGAAGTTAATTGGATTAACTGGTAGCCCCGATGAGGTCAAGAATGTTGCTCGTGCATATCGCGTTTATTACATGAAGACAGCAGAGGAAGACTCAGATTATCTTGTTGATCACTCCATTGTTATATGATCTAATCTTTGAAATATTTCAATGGCAAGGATGAGAGTAGAAATAGTGGAGATACTTGATGAGTCCTGAGATGGAATTCGTAAAGTTTTTTGGCAAGAACAATGATGTTGACTCACTTGCTGATGGTGTTATTAAAGAGGTAACGCAGCATAAGAAATAACCTGCACAACCAGGCTATTGATACCCTCATTTCTTTATCGTGGAAACGAAATTGTCAATGAATTTTGGCCTTGTGGTAGTAAACTACACCAGCATGTCTGGTTTTACAAAGCAACTTATTGGTGTCATTGTTTCAATGTTGTTGTTTAGCATTGTGCTTGAATTATTTTTTTTGGTGATATGTTATTGGTGTATTTTGAGATGCAACAACATTACAATTGTCATGTTCAACATGCCTTACATCAGAGGTGGCATCTATAATAAGAAATACCATGGTTTATATTGATGATATATTAAATTACGATCTTTCTACAGGGAAGAGCTTACAATTAAAATGAATCTGATTGGTTTCCTTTCT

Coding sequences of Glyma07g18460

Limit To All Plant Sequences

>Glyma07g18460.1   sequence type=CDS   gene model=Glyma07g18460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTACATCGTATCCAGCAAGGTTAACCAATTTCGCTATTCCACGCGCCTTCTCTTCTCACACCTTCTTCGCCATGGCAGACCCTCCACGCTTTTACCACCCTTCTCTTCTCATCTTCAACCACTCCATCACCCTCACCAGGTTGGGAATCAAGGTTATGGAAATGGGTCGTTGGGGTTGTGCCCAAGGCTTCTATCTTCTTCTTCTTCTTCTGATGCTTCTGCTGCTAATGTTAGTGGAGAAAAACCAGCATTGGATTCAGATCAATCTGCAAAAGATGGTTCTGGCAAAGAGAGAGAGTCTGGGAGTGGAGGAGGACAGGATCAGAAAAGTGATGCTGGGAAATCTGTTCGTGGAGGGCCTGTTTCTTGGTTGAGCTTTCTCTTGTTGGTTCTCACTGGAGCTGGACTAGTGTTCTACTACGACAGGGAAAAGAAACGACATATCGAAGGGATACGTACTAATACGGAGGCTGTTAAGCAGGGACCTTCTGCAGGAAAAGCTGCAATTGGGGGTCCATTTTGCCTTATCAACCATCACGGAAAACATGTAACTGAAAAGGATTTCATGGGAAAGTGGACTTTGTTATATTTTGGCTTTACTCACTGCCCGGATATCTGTCCAGAGGAACTACAGAAGTTAGCAGCTGCTGTTGATAAAATAAAGGAGAAAGCTGGAATTGAAACTGTTCCGGTTTTTATCTCTGTTGATCCTGAGAGGGATACTGTTGAACAAGTCGGTGAATATGTCAAAGAATTTCATCCGAAGTTAATTGGATTAACTGGTAGCCCCGATGAGGTCAAGAATGTTGCTCGTGCATATCGCGTTTATTACATGAAGACAGCAGAGGAAGACTCAGATTATCTTGTTGATCACTCCATTGTTATATACTTGATGAGTCCTGAGATGGAATTCGTAAAGTTTTTTGGCAAGAACAATGATGTTGACTCACTTGCTGATGGTGTTATTAAAGAGGTAACGCAGCATAAGAAATAA

>Glyma07g18460.2   sequence type=CDS   gene model=Glyma07g18460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTACATCGTATCCAGCAAGGTTAACCAATTTCGCTATTCCACGCGCCTTCTCTTCTCACACCTTCTTCGCCATGGCAGACCCTCCACGCTTTTACCACCCTTCTCTTCTCATCTTCAACCACTCCATCACCCTCACCAGGTTGGGAATCAAGGTTATGGAAATGGGTCGTTGGGGTTGTGCCCAAGGCTTCTATCTTCTTCTTCTTCTTCTGATGCTTCTGCTGCTAATGTTAGTGGAGAAAAACCAGCATTGGATTCAGATCAATCTGCAAAAGATGGTTCTGGCAAAGAGAGAGAGTCTGGGAGTGGAGGAGGACAGGATCAGAAAAGTGATGCTGGGAAATCTGTTCGTGGAGGGCCTGTTTCTTGGTTGAGCTTTCTCTTGTTGGTTCTCACTGGAGCTGGACTAGTGTTCTACTACGACAGGGAAAAGAAACGACATATCGAAGGGATACGTACTAATACGGAGGCTGTTAAGCAGGGACCTTCTGCAGGAAAAGCTGCAATTGGGGGTCCATTTTGCCTTATCAACCATCACGGAAAACATGTAACTGAAAAGGATTTCATGGGAAAGTGGACTTTGTTATATTTTGGCTTTACTCACTGCCCGGATATCTGTCCAGAGGAACTACAGAAGTTAGCAGCTGCTGTTGATAAAATAAAGGAGAAAGCTGGAATTGAAACTGTTCCGGTTTTTATCTCTGTTGATCCTGAGAGGGATACTGTTGAACAAGTCGGTGAATATGTCAAAGAATTTCATCCGAAGTTAATTGGATTAACTGGTAGCCCCGATGAGGTCAAGAATGTTGCTCGTGCATATCGCGTTTATTACATGAAGACAGCAGAGGAAGACTCAGATTATCTTGTTGATCACTCCATTGTTATATGA

Predicted protein sequences of Glyma07g18460

Limit To All Plant Sequences

>Glyma07g18460.1   sequence type=predicted peptide   gene model=Glyma07g18460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAYIVSSKVNQFRYSTRLLFSHLLRHGRPSTLLPPFSSHLQPLHHPHQVGNQGYGNGSLGLCPRLLSSSSSSDASAANVSGEKPALDSDQSAKDGSGKERESGSGGGQDQKSDAGKSVRGGPVSWLSFLLLVLTGAGLVFYYDREKKRHIEGIRTNTEAVKQGPSAGKAAIGGPFCLINHHGKHVTEKDFMGKWTLLYFGFTHCPDICPEELQKLAAAVDKIKEKAGIETVPVFISVDPERDTVEQVGEYVKEFHPKLIGLTGSPDEVKNVARAYRVYYMKTAEEDSDYLVDHSIVIYLMSPEMEFVKFFGKNNDVDSLADGVIKEVTQHKK*

>Glyma07g18460.2   sequence type=predicted peptide   gene model=Glyma07g18460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAYIVSSKVNQFRYSTRLLFSHLLRHGRPSTLLPPFSSHLQPLHHPHQVGNQGYGNGSLGLCPRLLSSSSSSDASAANVSGEKPALDSDQSAKDGSGKERESGSGGGQDQKSDAGKSVRGGPVSWLSFLLLVLTGAGLVFYYDREKKRHIEGIRTNTEAVKQGPSAGKAAIGGPFCLINHHGKHVTEKDFMGKWTLLYFGFTHCPDICPEELQKLAAAVDKIKEKAGIETVPVFISVDPERDTVEQVGEYVKEFHPKLIGLTGSPDEVKNVARAYRVYYMKTAEEDSDYLVDHSIVI*

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