Glyma07g18391 - SoyBase

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Report for Sequence Feature Glyma07g18391

Feature Type:	gene_model
Chromosome:	Gm07
Start:	18311115
stop:	18322332
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g18391

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G51830	AT	Annotation by Michelle Graham. TAIR10: SAC domain-containing protein 8 \| chr3:19220237-19225092 FORWARD LENGTH=588	SoyBase	E_val: 0	ISS
GO:0032957	GO-bp	Annotation by Michelle Graham. GO Biological Process: inositol trisphosphate metabolic process	SoyBase	N/A	ISS
GO:0046855	GO-bp	Annotation by Michelle Graham. GO Biological Process: inositol phosphate dephosphorylation	SoyBase	N/A	ISS
GO:0004439	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	SoyBase	N/A	ISS
GO:0042578	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphoric ester hydrolase activity	SoyBase	N/A	ISS
KOG1889	KOG	Putative phosphoinositide phosphatase	JGI		ISS
PTHR11200	Panther	INOSITOL 5-PHOSPHATASE	JGI		ISS
PF02383	PFAM	SacI homology domain	JGI		ISS
UniRef100_B9T1J1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Suppressor of actin, putative n=1 Tax=Ricinus communis RepID=B9T1J1_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233906A	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233906A related cluster n=1 Tax=unknown RepID=UPI000233906A	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g18391

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g18391 not represented in the dataset	Glyma07g18391 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g18391

Paralog	Evidence	Comments
Glyma18g43270	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g18391 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g151700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g18391

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g18391

Limit To All Plant Sequences

>Glyma07g18391.1   sequence type=CDS   gene model=Glyma07g18391   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACATTGAACCCCCTTCGAGTTCACCCGAAAGATTCAAGCTTTACGATGAGCTGGAACTGCTCGAGTTTCAGGACAAGTTCGTGATCAAATCTCATCAATCCCCCAACCATGGCTTCTGGATTAACCGTCTTGATGGCAGCATCAATGTATTTGATGATGATGGTGACACATTCTCTGGAAGTCCATTGAGGACATCTACAATTTATGGTGTGGTGGGAACCATAAGATTGGTTGTAGGAACTTATGCTATTGTAATAACTTCTCGGAAGGAAGTTGGAAGTTTCCTTGGCTTTCCAGTATATCGCTTGATGTCCATGAGATTACTTGCATGTAATGAAGCTTTGAGGTTTTCAACTGCTCAAGAAAAAAAGGATGAGACTTTCTTCCTGACCCTATTAAAAGTAGTGGAGTCAATGCCAGGCTTGTACTATTCATATGAAACAGATATTACATTAAACTTGCATAGAAGAAGCAAGTTAGTAGAAGGCTGGACAAGTAAGCCAATCTGGAAGCAGGCTGACCCTCGATTTGTCTGGAACAAACATCTTTTGGAGGAGCTTATTGAGTTGAAGGTTGACAAATTCATCGTGCCCATAGTACAAGGGAATATCCTGAACTTTCAAGTAGCAGAGCTGAAGCTAAAAGACTCAAATGCTACAGTGACCTTATTTTCAAGAAGATGTACACGGCGTCTAGGAACAAGAATGTGGAGAAGAGGAGCTAACCTTGAAGGTGACTCTGCTAATTTCATTGAAACTGAACAGTTGCTTGAAACTGAAGAATTCAAGTTCTCATTTTTGCAGGCTCGAGGTTCAATTCCCCTTTTGTGGGAGCAGATTGTTGATCTAAGCTATAAACCGCACCTTAGGGTTATTAGTCATGAGGAAACACCCAAGATTGTGGAGCGTCATTTCCATGATCTCATGCAAAGATATGGAGAGATAGTAGCACTTGATCTTACTGATAAACATGGTGAAGAAGGTCAATTAAGTGCAGCATATGCTGCTGAAATGCAAAATCAGCAAAATGTGAGATATGTGCCTTTTGATTTTCATCACTACTGTGGGAGCTCAAACTTTGATAATCTGAAAATCCTCTATGATCAAATCTCGGAGGATTTTGAAAAACAAAGATACTTCTTGATAGATAGACAAGGAAATATACTAGAGGAGCAGAGAGGACTTGTCAGAGTAAACTGCATTGATTCCCTTGATCGAACAAATGTTACTCAGTGTTATCTGGCCCAGAAGTCATTAAATCTTCAGTTGCAGAGGATTGAAGCGCTGACTTCCTCTGAGTGCATTTCCATGTTTGAAGAGGAATATGGAAAATTTAGAATATTGTGGGCAGACCAAGGTGATGAGATAAGTCTCGAGTATGCTGGAACTCATGCACTCAAGGGGGACTTAGTTAGATATGGGAAACAAACAATAACTGGAATGATTAAAGATGGGATGAGTGCACTTTCCCGATATTACTTGAATAACTTCCAGGATGGGATTCGGCAGGCAAGGAACTTGGATGCCCTGGATTTGATAAGTGGTCACTATAATGTCAGCAGAAACGTTCCTTCTCCTTTCCGGTCGAATAACTTTGAACCTCTAACGTACCTGCCTGTGGCATCAGCTTTGATAATTGGAGGTTTGACAGCAACAACCTTCACTCTTCAGCAAGCGGGCCGAAATACACAGCATTATGTGTCTTCTGTACTCTGTGCTGGAATAACTGCTGGTGTCATGGCAATTGTCAAAGCTAATGGAAGACATTTCTGCTCAAGACCCCGTTTGTGTGGTCTCTTGTGA

Predicted protein sequences of Glyma07g18391

Limit To All Plant Sequences

>Glyma07g18391.1   sequence type=predicted peptide   gene model=Glyma07g18391   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDIEPPSSSPERFKLYDELELLEFQDKFVIKSHQSPNHGFWINRLDGSINVFDDDGDTFSGSPLRTSTIYGVVGTIRLVVGTYAIVITSRKEVGSFLGFPVYRLMSMRLLACNEALRFSTAQEKKDETFFLTLLKVVESMPGLYYSYETDITLNLHRRSKLVEGWTSKPIWKQADPRFVWNKHLLEELIELKVDKFIVPIVQGNILNFQVAELKLKDSNATVTLFSRRCTRRLGTRMWRRGANLEGDSANFIETEQLLETEEFKFSFLQARGSIPLLWEQIVDLSYKPHLRVISHEETPKIVERHFHDLMQRYGEIVALDLTDKHGEEGQLSAAYAAEMQNQQNVRYVPFDFHHYCGSSNFDNLKILYDQISEDFEKQRYFLIDRQGNILEEQRGLVRVNCIDSLDRTNVTQCYLAQKSLNLQLQRIEALTSSECISMFEEEYGKFRILWADQGDEISLEYAGTHALKGDLVRYGKQTITGMIKDGMSALSRYYLNNFQDGIRQARNLDALDLISGHYNVSRNVPSPFRSNNFEPLTYLPVASALIIGGLTATTFTLQQAGRNTQHYVSSVLCAGITAGVMAIVKANGRHFCSRPRLCGLL*

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