Glyma07g18361 - SoyBase

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Report for Sequence Feature Glyma07g18361

Feature Type:	gene_model
Chromosome:	Gm07
Start:	18269111
stop:	18280460
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g18361

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G05570	AT	Annotation by Michelle Graham. TAIR10: transducin family protein / WD-40 repeat family protein \| chr5:1656766-1663728 FORWARD LENGTH=1099	SoyBase	E_val: 0	ISS
GO:0016192	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport	SoyBase	N/A	ISS
GO:0032259	GO-bp	Annotation by Michelle Graham. GO Biological Process: methylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0008168	GO-mf	Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity	SoyBase	N/A	ISS
KOG1983	KOG	Tomosyn and related SNARE-interacting proteins	JGI		ISS
PTHR10241	Panther	TOMOSYN	JGI		ISS
PTHR10241:SF11	Panther	LETHAL GIANT LARVAE-RELATED	JGI		ISS
PF00400	PFAM	WD domain, G-beta repeat	JGI		ISS
PF00957	PFAM	Synaptobrevin	JGI		ISS
UniRef100_B9T1J5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nucleotide binding protein, putative n=1 Tax=Ricinus communis RepID=B9T1J5_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233881A	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233881A related cluster n=1 Tax=unknown RepID=UPI000233881A	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g18361

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g18361 not represented in the dataset	Glyma07g18361 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g18361

Paralog	Evidence	Comments
Glyma18g43225	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g18361 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g151400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g18361

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g18361

Limit To All Plant Sequences

>Glyma07g18361.1   sequence type=CDS   gene model=Glyma07g18361   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTGCCAAGAGGTTGTTGCACAAGGCTGTGCAGCACCATTCCAACCACAAGTTGCAGCATGGTGGTTTGCAAGGGAGTGAGTTGGATCCCAGAATTGTGATTCACTATGGCATTCCATCCACTGCTTCAGTTCTCGCTTTTGACCCCATTCAGCGACTTTTGGCTATTGGGACTTTGGATGGAAGACTTAAGGTGATTGGGGGTGATAATATAGAAGGACTATTGGTTTCTCCTAAGCAATTGCCTTACAAATACTTGGAGTTCCTTCAAAACCAGGGGCATTTAGTTGGTGTCTTAAATGACAATGATATCCAGGTTTGGAATCTTGAGAGCCGGAGCCTTGTTTGTTCTTTACAATGGGAGTTCGATATTACTGCTTTTTCTGTAATCAGCGGTTCACATTTCATTTATGTTGGAGATCAGCATGGCTTATTTTCTGTGATAAAGTTCGAAGCTGAGGAAGGACAACTTTTGAAGTCATCATACTATTTGTCTGCAAAATTTTTAAGGGAAGCTGCAGGCTTTCCAGAACCCAGTGAGCAACCAATTGTTGGAGTTCTTTTGCAACCTTCTTCTTTCGGGAACAGACTCTTAATTGCGTTTGAGGATGGACTGCTTATTCTTTGGGATGTTTCTGAATCTAGAATTGTGTTTCTTGGTGGTGGAAAAGATCTCCAATTGAAGGATGAAGATGGTAACTCTTCTTCCGAAACGGGCACCAATCCTCCAGCTGATATTGTAGAACAAAATCTAGGTGACAAAGAGATAACTGCTCTTTGCTGGGCATCTTCTACTGGGTCCATTCTTGCCGTGGGATACTTAGATGGAGATATCCTTCTCTGGAACTTGTCATCAGCAACAGCTTCTAAAGGCCAACAAACTTCTAAAAATGTTGTTAAGCTACAACTTTCAACTGCAGAAAGAAGACTCCCAGTCATTGTCTTACAATGGTCCAACAGCCATAAATCCCAAAGTGATAGTTTTGGGCAGTTGTTTGTCTATGGTGGCGATGAAATTGGATCTGAAGAAGTTTTGACTGTTTTAACTCTCGAATGGTCATCCGGGATGGAGTCCGTAAAATGCACCAATCGTGCAGACCTTACACTTAGTGGCTCTTTTGCAGACTTGATTTTACTGCCAAGTCCTGGAACGATGGGGTTGAGCAGCAAAGATGAACTTTTTGTACTGGCAAACCCTGGACAACTACATTTGTATGATAATGATAGCCTTTCCGCATTAACATCTCAGCTGACGAGAACGCCATCCGTTTCTGCTTTGGAGTTTCCAGTGCTAGTACCTATTTCTGATCCATGTTTGACTGTTGCAATACTTATCAGGTTGCCCAGTAACTCAAATTCATCAAAAAATTTCACTGAGGTAGCCTCAGCTCTGAGAACTGGCTCAAGGCATGGATCAGCTCCTTCAAATTGGCCCTTGACTGGGGGTGTTCCCAGTCTGTCATCCACAGCTAAAGGTGCTGTGGTTGAGAGAGTTTATTTTGTGGGTTATTCCAATGGATCTGTCCTTGTGTGTGATGCCACACATGCAGTCTTATCTTATATTTGCTACATAGAGGGAGAAGTGAATGGTATAAAAGTGGCTGGTTCAGATGCTCAAGTGACAAAATTGGACTTCTGCTCTGTTTCTTTACTGTTGGCTGTGGGCAATGAATGTGGTCTTGTTCGCATTTATGACCTCAAAAGCCACTCTGGTGGACGAAATTTCCATTTTTTCACAGAAACAAAAAGTGAAGTTCTTGACACTCCAGAAGGAAAAGGATCTTACTGTAGCGCTGTCTTTTCTGTTCTGGATTCCCCTGTGCAAGCATTATCATTTGCAAATTCTGGAACTAAACTTGCTATTGGATTTTCAAGTGGTAGTATTGCAGTCTGTAATGTGACTTCATTGTCAGTTTTGTTCTTGATTGATGGTGTACCTAGCTCTAGTTCACCAATTACTTCATTGGTTTGGAAACAAGAAGCATATTTTCAAAGTGAAGTGAATAGTTTAAAGCCATCAGAAACAGATTCAGGCAACTCTCTTGAAGAAATACTATTTGTGTTATCCCGGGATGGAAAAATTAATATAGTTGATGGTGATAGTGGAAAAATTATCTGCAGTCGGCCATTACAAGTGAAGGAATCCACTGCAATTTCAATGTATGTTATAGAGGGTAGCATCTCAGCATCTGAAGCATCAAATGACAAGCTGCAGGAAGAAACTGTGAAGAATACTGCTGATGCTAGCCCTGATGAGGAGGAAGAACCCTTATCAACTAGGGTAAATTCATCAGAAGCTGGTCTTTCCTCTTCAGAAAGCTCACACTCTGGAGATTTGCTGTTGGATCCACTTGTTCTGCTATGCTGCGAGAATTCATTGCGTTTGTTCTCTGCAAAATCTTTGATACAGGGACATAAGAGACCAATTAAAAAAGTGAAACATTCTAAATCTTGTTATTGGACTACAATTTTTAAGAAAGATGGCAAAGTTTATGGGCTTTTATCATTGCTTCAGACTGGAACATTTGAAATCAGGTCTTTACCAGATTTGGAATTGGTTGCAGAAAGCTCTTTATTGTCAATTTTAAGATGGAATTATAAAGTGAATATGGATAAAACCATGTGTTCTGATGATTATGGAGAGATAGTGCTGGCTAACAGTTCTGAATTGGCCTTCATGTCATTACTGGCTGGCAAAGATGAATTCAGTAATCTGGAGCATCTGCCTTGTCTTCACGATAAAGTTCTTGCAGCCGCTGCTGATGCTGCCTTTAAATTCTCTTCAAATCAGAAGAAAAAACAGACTGTGGTGCCGGGGATTCTAGGTGGTATTGTCAAAGGGTTTAAAGGAGGAAAAACCACTCCAACAGATGTGACTAAAATTCCAACCTCCAATTTTGGTCATTTGGAAGACATTTTCTTTAAGCCCCCCTTGCCTGATTCCCCTACAACAGTGGCAATCCCAGATAAGAAAGAAGCGGAGCTTGATATAGATGACATTGAAATAGACGAGCCCCATCAGCCCATACCTAAGGCTTCTACTTCCTCTCCTGATGTTAAAAATAAACAGAAAGATAAGTTACAAGATAGGGAGAAACTATTTGAAGGTGGGACCAACAATGATGATTTAAAGCCAAGACTTAGAAAACCTGAAGAAATTATGGCTACTTATAGAAAAACTGAGGATGCTGCTTCAGTTGCTGCCCAAGCAAGAAACAAGCTTATGGAGAGGCATGAAAAATTGGAGAGAATCAGCCAACGTACTGCTGAACTGCAAAGTGGAGCTGAAAATTTTGCGTCATTAGCAAATGAGCTTGTTAAGACCATGGAAAGGAGGAAATGGTGGCAAATATAG

Predicted protein sequences of Glyma07g18361

Limit To All Plant Sequences

>Glyma07g18361.1   sequence type=predicted peptide   gene model=Glyma07g18361   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFAKRLLHKAVQHHSNHKLQHGGLQGSELDPRIVIHYGIPSTASVLAFDPIQRLLAIGTLDGRLKVIGGDNIEGLLVSPKQLPYKYLEFLQNQGHLVGVLNDNDIQVWNLESRSLVCSLQWEFDITAFSVISGSHFIYVGDQHGLFSVIKFEAEEGQLLKSSYYLSAKFLREAAGFPEPSEQPIVGVLLQPSSFGNRLLIAFEDGLLILWDVSESRIVFLGGGKDLQLKDEDGNSSSETGTNPPADIVEQNLGDKEITALCWASSTGSILAVGYLDGDILLWNLSSATASKGQQTSKNVVKLQLSTAERRLPVIVLQWSNSHKSQSDSFGQLFVYGGDEIGSEEVLTVLTLEWSSGMESVKCTNRADLTLSGSFADLILLPSPGTMGLSSKDELFVLANPGQLHLYDNDSLSALTSQLTRTPSVSALEFPVLVPISDPCLTVAILIRLPSNSNSSKNFTEVASALRTGSRHGSAPSNWPLTGGVPSLSSTAKGAVVERVYFVGYSNGSVLVCDATHAVLSYICYIEGEVNGIKVAGSDAQVTKLDFCSVSLLLAVGNECGLVRIYDLKSHSGGRNFHFFTETKSEVLDTPEGKGSYCSAVFSVLDSPVQALSFANSGTKLAIGFSSGSIAVCNVTSLSVLFLIDGVPSSSSPITSLVWKQEAYFQSEVNSLKPSETDSGNSLEEILFVLSRDGKINIVDGDSGKIICSRPLQVKESTAISMYVIEGSISASEASNDKLQEETVKNTADASPDEEEEPLSTRVNSSEAGLSSSESSHSGDLLLDPLVLLCCENSLRLFSAKSLIQGHKRPIKKVKHSKSCYWTTIFKKDGKVYGLLSLLQTGTFEIRSLPDLELVAESSLLSILRWNYKVNMDKTMCSDDYGEIVLANSSELAFMSLLAGKDEFSNLEHLPCLHDKVLAAAADAAFKFSSNQKKKQTVVPGILGGIVKGFKGGKTTPTDVTKIPTSNFGHLEDIFFKPPLPDSPTTVAIPDKKEAELDIDDIEIDEPHQPIPKASTSSPDVKNKQKDKLQDREKLFEGGTNNDDLKPRLRKPEEIMATYRKTEDAASVAAQARNKLMERHEKLERISQRTAELQSGAENFASLANELVKTMERRKWWQI*

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