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Report for Sequence Feature Glyma07g18080

Feature Type:gene_model
Chromosome:Gm07
Start:17829024
stop:17832694
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma07g18080
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G01520AT Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr5:206797-208399 FORWARD LENGTH=242 SoyBaseE_val: 3.00E-122ISS
GO:0015996GO-bp Annotation by Michelle Graham. GO Biological Process: chlorophyll catabolic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
KOG1039 KOG Predicted E3 ubiquitin ligase JGI ISS
PTHR15067Panther FAMILY NOT NAMED JGI ISS
PTHR15067:SF7Panther ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEI JGI ISS
UniRef100_G7JN27UniRef Annotation by Michelle Graham. Most informative UniRef hit: RING finger protein n=1 Tax=Medicago truncatula RepID=G7JN27_MEDTR SoyBaseE_val: 6.00E-132ISS
UniRef100_I1KKD6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KKD6_SOYBN SoyBaseE_val: 7.00E-179ISS

Expression Patterns of Glyma07g18080
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g18080
ParalogEvidenceComments
Glyma18g42920 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g18080 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g148900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma07g18080
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma07g18080
>Glyma07g18080.1   sequence type=CDS   gene model=Glyma07g18080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGCAAGTCTTTCAAGGATTCACTCAAAGCTCTTGAAGCTGATATCCAGTTTGCCAACACACTAGCTTCTGAGTATCCAAGTGGTGGTGCCTGCTTCCAATTGAGATTGTCCTACAGCCCAGCTGCTCAATTCTTCCTTTTCCTGGTTCAGTGGACTGATTGTCACCTTGCTGGAGCTTTAGGATTCATCAGAATTCTTATATACAAGGCATATGAAGATGGGAAGACAACCATGTCCATTTATGAAAGAAAAGCCAGTCTAAGGGAGTTCTATGGCGTGGTGTTTCCCTCTTTATTGCAACTTCACAGAGGAATCACCGATGTTGATGACAGGAAACAAAAACATCTATGTGCTACTAAGTATAAGCTTAAAGATTTGACAAGCAAAGGAAACCTTTCTGAAATTGACATGGAGAGGGAATTAGAGTGTGGTATTTGCTTGGAGATAAATAGCAAGGTTGTATTGCCCAACTGCAATCATTCAATGTGTATGAAATGCTATGAAGACTGGCATGCAAGATCTCAGTCTTGTCCTTTCTGTCGAGACAGTCTCAAAAGAGTGAACACTGATGATCTTTGGATCTACATTAGCAGCAGTGAGATTAATGACTTGGCTTCAATCAACAAGGAGAATTTCAAAAGATTATTTATGTACATAGAAAGTTTGCCTCTCACAGCCAGACCCTATATGCACCATGCCATATATCATCACCACTAG
Predicted protein sequences of Glyma07g18080
>Glyma07g18080.1   sequence type=predicted peptide   gene model=Glyma07g18080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRKSFKDSLKALEADIQFANTLASEYPSGGACFQLRLSYSPAAQFFLFLVQWTDCHLAGALGFIRILIYKAYEDGKTTMSIYERKASLREFYGVVFPSLLQLHRGITDVDDRKQKHLCATKYKLKDLTSKGNLSEIDMERELECGICLEINSKVVLPNCNHSMCMKCYEDWHARSQSCPFCRDSLKRVNTDDLWIYISSSEINDLASINKENFKRLFMYIESLPLTARPYMHHAIYHHH*






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