Glyma07g17931 - SoyBase

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Report for Sequence Feature Glyma07g17931

Feature Type:	gene_model
Chromosome:	Gm07
Start:	17720907
stop:	17722129
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g17931

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G01260	AT	Annotation by Michelle Graham. TAIR10: Carbohydrate-binding-like fold \| chr5:105367-106488 FORWARD LENGTH=306	SoyBase	E_val: 1.00E-42	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0010264	GO-bp	Annotation by Michelle Graham. GO Biological Process: myo-inositol hexakisphosphate biosynthetic process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0030246	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carbohydrate binding	SoyBase	N/A	ISS
GO:2001070	GO-mf	Annotation by Michelle Graham. GO Molecular Function: starch binding	SoyBase	N/A	ISS
PTHR10357	Panther	AMYLASE	JGI		ISS
PTHR10357:SF64	Panther	NEOPULLULANASE-RELATED	JGI		ISS
PF00686	PFAM	Starch binding domain	JGI		ISS
UniRef100_G7JN22	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Alpha-amylase n=1 Tax=Medicago truncatula RepID=G7JN22_MEDTR	SoyBase	E_val: 3.00E-55	ISS
UniRef100_I1J7A4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J7A4_SOYBN	SoyBase	E_val: 2.00E-76	ISS

Expression Patterns of Glyma07g17931

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g17931 not represented in the dataset	Glyma07g17931 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g17931

Paralog	Evidence	Comments
Glyma18g42781	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g17931 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g148000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g17931

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g17931

Limit To All Plant Sequences

>Glyma07g17931.1   sequence type=CDS   gene model=Glyma07g17931   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCCTCAACACCTCTTGCTCCATGGCCATTGTTGACATGCTAGGAACTCATGTTCCTAAATGTGCTATTCATGTTTCTAACACACCCAAATTTTCCTTGTCCCAGCTGAATGACAAAAAGGGCTGCAACTTGGGGTTCCCCAAACTTGTTCAAAACAACAAGGGCCTTTTCCCACTTCATGCTGTGCCATCCAAAACAATGGTGGACTTGGACAATTTGGTGCTTCAATCTCAAGAACAACCAATGGAATCAAAGACAATAAATGTCAAATTTCAGTTACAACGCAATTGTAATTTTGGGGAAGAATTTCTAGTAGTTGGTAATGATCCTATGTTTGGTTCATGGAACCCTGAAAATGCCATACCAATGACATGGTCAGAAGGGCATGTGTGGACTGCAGAGATGGGTGTACCTGTTGGAAAATTCCAATTCAAAATCATTCTGAAAACAAGAGAAGGTGAGATTGTTTGGCAGCCAGGGCCAGATAGAAATCTCCACACATGGGAAGCAATGAACAGAATCACTGTTTGTGAGGATTGGGACAATGCTGAGCAACAGAAAGTAACAGAAGATGATGGAGTTCCAAACATTAAGGAGGAAGATCAACTTGCTAACACAAACAAGGAATTCCAGATGGAGTCAGAAATGCCAAATTTTGCCGAGAATTTGGGTAATTCTAAGGAGAAGCTGAAATCAATTCTGATAAAGTGCTAA

Predicted protein sequences of Glyma07g17931

Limit To All Plant Sequences

>Glyma07g17931.1   sequence type=predicted peptide   gene model=Glyma07g17931   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALNTSCSMAIVDMLGTHVPKCAIHVSNTPKFSLSQLNDKKGCNLGFPKLVQNNKGLFPLHAVPSKTMVDLDNLVLQSQEQPMESKTINVKFQLQRNCNFGEEFLVVGNDPMFGSWNPENAIPMTWSEGHVWTAEMGVPVGKFQFKIILKTREGEIVWQPGPDRNLHTWEAMNRITVCEDWDNAEQQKVTEDDGVPNIKEEDQLANTNKEFQMESEMPNFAENLGNSKEKLKSILIKC*

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