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Report for Sequence Feature Glyma07g17646

Feature Type:gene_model
Chromosome:Gm07
Start:17400294
stop:17402175
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma07g17646
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G01190AT Annotation by Michelle Graham. TAIR10: laccase 10 | chr5:72392-74612 FORWARD LENGTH=558 SoyBaseE_val: 5.00E-54ISS
GO:0010413GO-bp Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process SoyBaseN/AISS
GO:0045492GO-bp Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process SoyBaseN/AISS
GO:0046274GO-bp Annotation by Michelle Graham. GO Biological Process: lignin catabolic process SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0048046GO-cc Annotation by Michelle Graham. GO Cellular Compartment: apoplast SoyBaseN/AISS
GO:0005507GO-mf Annotation by Michelle Graham. GO Molecular Function: copper ion binding SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
GO:0052716GO-mf Annotation by Michelle Graham. GO Molecular Function: hydroquinone:oxygen oxidoreductase activity SoyBaseN/AISS
PTHR11709Panther MULTI-COPPER OXIDASE JGI ISS
PTHR11709:SF9Panther LACCASE JGI ISS
PF00394PFAM Multicopper oxidase JGI ISS
PF07731PFAM Multicopper oxidase JGI ISS
UniRef100_B9HT10UniRef Annotation by Michelle Graham. Most informative UniRef hit: Laccase 3 n=1 Tax=Populus trichocarpa RepID=B9HT10_POPTR SoyBaseE_val: 2.00E-71ISS
UniRef100_UPI00023386A1UniRef Annotation by Michelle Graham. Best UniRef hit: UPI00023386A1 related cluster n=1 Tax=unknown RepID=UPI00023386A1 SoyBaseE_val: 2.00E-146ISS

Expression Patterns of Glyma07g17646
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g17646 not represented in the dataset
Glyma07g17646 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma07g17646 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g146000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma07g17646
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma07g17646
>Glyma07g17646.1   sequence type=CDS   gene model=Glyma07g17646   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCAATGATGTGTACAAGCTTCCTGTGGAAAGTGGCAAGACCTACTTACTGAGAATCATCAATGCTGCACTCAATGAGGAGCTCTTCTACAAAATTGCTGGCCATTCACTCACTGCCTGTACTTTCATTGATTCTCCAGTGGTATCTGTGGATAACTTGACTGCTATAGCCACATTGCAGTACACTGGCACTCTTTCCACCACCCCCACACTTTTCACCATCCCTCCCCCAAGAAATGCAACACAAATTGCTAACGACTTCAATAAGTCTCTTAAGAGCCTTAATTCCAAGAAATACCTATCAAAAGTTCCACAAACAGTTTACAACTACACGGCGACTCCACCAGTGGTTGCTTCGCAAACCACAAATGACACCAAGGCTTACAGGCTGGCATTCAATTCCACTGTTCATGTTGTTTTGCAGGATACTGGAGCTATTGCTCCTAAGAGCCTCCCGGTTCATCTTCATGGGTTCAATTTTTCCGTTGTTGGCTCTGGTGTGGGAAACTATGACCCCAAAACGAATCAAAATAACTTTAACCTTGTGGATCCTGTTGAGAGGAACACAATTGGAGTTCCTACTGGAGGATGGATTGCTTTCAGATTCAGAGCAGATAACCCAGGAGTATGGTTCTTTCACTGCCACTTCGAGGTGCATATAACAGGGGGGTTAAAGATGATATTCTTGGTGCACACAAACAAGGGGAGGCCTTCCTATGCATAA
Predicted protein sequences of Glyma07g17646
>Glyma07g17646.1   sequence type=predicted peptide   gene model=Glyma07g17646   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTNDVYKLPVESGKTYLLRIINAALNEELFYKIAGHSLTACTFIDSPVVSVDNLTAIATLQYTGTLSTTPTLFTIPPPRNATQIANDFNKSLKSLNSKKYLSKVPQTVYNYTATPPVVASQTTNDTKAYRLAFNSTVHVVLQDTGAIAPKSLPVHLHGFNFSVVGSGVGNYDPKTNQNNFNLVDPVERNTIGVPTGGWIAFRFRADNPGVWFFHCHFEVHITGGLKMIFLVHTNKGRPSYA*






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