Glyma07g17490 - SoyBase

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Report for Sequence Feature Glyma07g17490

Feature Type:	gene_model
Chromosome:	Gm07
Start:	17201065
stop:	17203120
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g17490

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G09070	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF740) \| chr3:2768880-2770937 REVERSE LENGTH=685	SoyBase	E_val: 3.00E-113	ISS
GO:0010088	GO-bp	Annotation by Michelle Graham. GO Biological Process: phloem development	SoyBase	N/A	ISS
GO:0010233	GO-bp	Annotation by Michelle Graham. GO Biological Process: phloem transport	SoyBase	N/A	ISS
GO:0010588	GO-bp	Annotation by Michelle Graham. GO Biological Process: cotyledon vascular tissue pattern formation	SoyBase	N/A	ISS
GO:0022622	GO-bp	Annotation by Michelle Graham. GO Biological Process: root system development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016324	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apical plasma membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF05340	PFAM	Protein of unknown function (DUF740)	JGI		ISS
UniRef100_D7M754	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glycine-rich protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7M754_ARALL	SoyBase	E_val: 1.00E-92	ISS
UniRef100_I1KKA5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KKA5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g17490

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g17490

Paralog	Evidence	Comments
Glyma18g42425	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g17490 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g144900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g17490

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g17490

Limit To All Plant Sequences

>Glyma07g17490.1   sequence type=CDS   gene model=Glyma07g17490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATCCCACCACCCAACCTCCACCGTCGTTGCCGCCACCGCCGTTGCCTCCGCCGCAGCTCCAGCCCCACCGCCCCTCCACCTCCTGCGACCGCCACCCTCAAGAGAACTTCACCGGCTTCTGCCCTTCATGCCTCTGCGAGCGCCTCGCCGTGCTCGATCCCAACTCCTCCTCCACCTCCTCCGCTGCCCGCAAGCCGCCAACTTCCTCCACTGCCGCCGCAGCCCTTAAGGCCATCTTCCGCCCCTCCATTGCAGCCCGCAACCGCCCTCCCCCCTCCTCCTTCCTCCCGGAGCTCCGCCGCACAAAATCCTTCTCCGCCTCCAAAAACGAAGCCCTCTCCGGCTTCTTCGAACCACAGAGAAAATCCTGCGACGTCCGCGGCCGCAGCACACTCTTCTCCCTCTTCAACCAAGAAGCCGCCGTCGCCGTCGAGGTCGAAACCCGCCACAACCTCCCTTCATCTTCCGTCGTTCAGAAACCCGTCCTCGAGTCCGAAGAAGAAGAAGAACAAGAACAAGAAAACAACAACATTGTCGTTCACAACGTGAACGACAACAACAACACTAGGGTTCCAGACTCACTACAACCACAACCAGAAGCAACCAATAATACCTTCACCGAACACAGAGTTTCGGTTTCAGAAATCGTAGAAGAGGAACCGGAGATAGTACTCGAACCCGAAGCTGACGTGGCAGCTGCAGAAGAAGACACACTGAAGGAGACGAAGGACCACATGGATCTGGATTCCTCCCAAACAAAGAAACCCTCCGGCGGCCGCGACTTGAAGGGCAGCTTCTGGTCCGCGGCTTCAGTCTTCAGCAAGAAGCTCCAGAAGTGGAGGCAGAAGCAGAAGAACAAAAAGCGCGAGCGAAACGGCGTCGTTGTGGGCTCCGGAACCCTCTTACCTGTCGAGAAACCGATCTCGCGGCAATTCCGCGAGACGCAGTCGGAGATCGCCGACTACGGCTTCGGGCGCCGCTCCTGCGACACCGATCCGCGGTTCTCGCTCGACGCTGCCCGAATGTCGTTCGATTTCGAAGAGCCGCGCGCTTCCTGGGACGGTTATTTGATGGCAAGGACGACATCATCGTTCGCGGCGGTTCCTCCGAGGATGCCTACTATGATTGAAGACGCGCCTGCGCCGGTTCAGGTTCTCAGAACCGATTCTCTTATCCCCGTGGAGGAGCCGGAATATGAGGACGCTCTCATTCTCAATCTCAATCTTAATCCTAATCCTAATCTCCCTGGTGGTTCTGCTCAGACGAAGGAGTATTATTCCGACTCTTCGCGCAGAAGGAAGAGTCTTGATCGGTCTAGTTCTATTAGGAGAACTGCTGCTGCTGTTGTTGCTGAAATGGATGAGTTGAAGGCTGTTGCAAATGCTAGTGCTAATGCTAATGCTAATGCGAGGGTTACTCCTGCTGCTTCTGCTGATTATGTGCATAATAATATTAATAATAATCCTTTGAGGGACTCCAATTTGAATTCGAATTCGAATTCAAATTTGTTGAGGGATGATGAGAAGGGGAGTTCTAAGAAGTCATCGAGCCCGGTGGAGGGCGTGGAGTATATGGGGATTGATACACCGGAGGGGAATAAGGAGGAGGAGGGTGGAGGGAACGGGAATGGGAATGGGGTGGAGAGGTCGTATTCGGAGTCGTGGCAGGAGTATAGAGGAGGAGGAGGAGGGGAGAAGAATGGGGATGTTAGGGGTGGTGGTTTTAATCCTAAGTTGATGAGGAGTAATAGCAGTGTGAGTTGGAGGAATGGGCAGAGTATGATAGGTGGTGGTGGTGGAGGGTTTGGGAATGTGAGTATGAGGAAGAGTGATGTGCAAGGGAATGGACTTGGACTTGGGCTTGGTGGAAGGAAGGGGAGGGATGAGTTTGTTGGGTTGGAGAGGAACCGTAGTGCCAGGTATTCCTCGCCGAACAGCATCGATAACAATGGTCTCTTGAGGCTCTACTTGGGTGGCAGGAGAAACGGGTCCGGGAAAGGAAGGTCGAACCAGGCACATTCTATCGCCAGAAACGTACTTCGATTGTATTGA

Predicted protein sequences of Glyma07g17490

Limit To All Plant Sequences

>Glyma07g17490.1   sequence type=predicted peptide   gene model=Glyma07g17490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNPTTQPPPSLPPPPLPPPQLQPHRPSTSCDRHPQENFTGFCPSCLCERLAVLDPNSSSTSSAARKPPTSSTAAAALKAIFRPSIAARNRPPPSSFLPELRRTKSFSASKNEALSGFFEPQRKSCDVRGRSTLFSLFNQEAAVAVEVETRHNLPSSSVVQKPVLESEEEEEQEQENNNIVVHNVNDNNNTRVPDSLQPQPEATNNTFTEHRVSVSEIVEEEPEIVLEPEADVAAAEEDTLKETKDHMDLDSSQTKKPSGGRDLKGSFWSAASVFSKKLQKWRQKQKNKKRERNGVVVGSGTLLPVEKPISRQFRETQSEIADYGFGRRSCDTDPRFSLDAARMSFDFEEPRASWDGYLMARTTSSFAAVPPRMPTMIEDAPAPVQVLRTDSLIPVEEPEYEDALILNLNLNPNPNLPGGSAQTKEYYSDSSRRRKSLDRSSSIRRTAAAVVAEMDELKAVANASANANANARVTPAASADYVHNNINNNPLRDSNLNSNSNSNLLRDDEKGSSKKSSSPVEGVEYMGIDTPEGNKEEEGGGNGNGNGVERSYSESWQEYRGGGGGEKNGDVRGGGFNPKLMRSNSSVSWRNGQSMIGGGGGGFGNVSMRKSDVQGNGLGLGLGGRKGRDEFVGLERNRSARYSSPNSIDNNGLLRLYLGGRRNGSGKGRSNQAHSIARNVLRLY*

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