Glyma07g17261 - SoyBase

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Report for Sequence Feature Glyma07g17261

Feature Type:	gene_model
Chromosome:	Gm07
Start:	16975429
stop:	16976118
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g17261

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
UniRef100_G7L1B0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Tyrosine/dopa decarboxylase n=1 Tax=Medicago truncatula RepID=G7L1B0_MEDTR	SoyBase	E_val: 2.00E-10	ISS
UniRef100_UPI0002338697	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338697 related cluster n=1 Tax=unknown RepID=UPI0002338697	SoyBase	E_val: 4.00E-53	ISS

Expression Patterns of Glyma07g17261

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g17261 not represented in the dataset	Glyma07g17261 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g17261

Paralog	Evidence	Comments
Glyma18g42171	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g17261 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g143300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g17261

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g17261

Limit To All Plant Sequences

>Glyma07g17261.1   sequence type=CDS   gene model=Glyma07g17261   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTACATGATGACTGATAACTTGGTTGTGACTCCAATGTCATACATTATTGCTGTTTCATATCTAAATAGTCTGAAAGTACCATTCTCTGACTTAGAGGAAAGGGTCATCACAATTGGTGTAAAGGAGGGTCTTGGAATATTGAAAGCTTCATTGACCTCAGCATTTGCTTTGATAAACGACCTGAAACACTTGATTAAAACCACTAAGGGGGAGAATGAATCAATCACTTCCGTCTGGTCTAAATTTATAAATAAGGTTTTTAATTCTAGCCACAACTTCAAAGTTTTTAGATTCCTTGCAGTGTATCACCACTGCAATTGCGGTTGCATAGTGGCATGTGTATGCAATTTCTTAGGACATCAAAGATTGCAACAACAAGACCGGAACCAAAATTTAAAACTTTGGTTAAGGAATTTGGGTGCTACAAAATACACTCTAACATATATCAGAGCCTTTCTTTTGTTATTATGCTTTGTATTTGGTGAACTCTGTTTTATCAAGTATATTTCGTTATGTTTCGCGTAA

Predicted protein sequences of Glyma07g17261

Limit To All Plant Sequences

>Glyma07g17261.1   sequence type=predicted peptide   gene model=Glyma07g17261   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYMMTDNLVVTPMSYIIAVSYLNSLKVPFSDLEERVITIGVKEGLGILKASLTSAFALINDLKHLIKTTKGENESITSVWSKFINKVFNSSHNFKVFRFLAVYHHCNCGCIVACVCNFLGHQRLQQQDRNQNLKLWLRNLGATKYTLTYIRAFLLLLCFVFGELCFIKYISLCFA*

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