SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G09220 | AT | Annotation by Michelle Graham. TAIR10: laccase 7 | chr3:2827434-2830477 REVERSE LENGTH=567 | SoyBase | E_val: 0 | ISS |
| GO:0000041 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transition metal ion transport | SoyBase | N/A | ISS |
| GO:0006826 | GO-bp | Annotation by Michelle Graham. GO Biological Process: iron ion transport | SoyBase | N/A | ISS |
| GO:0010106 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion starvation | SoyBase | N/A | ISS |
| GO:0010167 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to nitrate | SoyBase | N/A | ISS |
| GO:0015706 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nitrate transport | SoyBase | N/A | ISS |
| GO:0046274 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lignin catabolic process | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0048046 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: apoplast | SoyBase | N/A | ISS |
| GO:0005507 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: copper ion binding | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| GO:0052716 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydroquinone:oxygen oxidoreductase activity | SoyBase | N/A | ISS |
| KOG1263 | KOG | Multicopper oxidases | JGI | ISS | |
| PTHR11709 | Panther | MULTI-COPPER OXIDASE | JGI | ISS | |
| PTHR11709:SF9 | Panther | LACCASE | JGI | ISS | |
| PF00394 | PFAM | Multicopper oxidase | JGI | ISS | |
| PF07731 | PFAM | Multicopper oxidase | JGI | ISS | |
| PF07732 | PFAM | Multicopper oxidase | JGI | ISS | |
| UniRef100_B9HC76 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Laccase 110a n=1 Tax=Populus trichocarpa RepID=B9HC76_POPTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KK82 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KK82_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma07g17140 not represented in the dataset |
Glyma07g17140 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma18g41860 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g142400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g17140.1 sequence type=CDS gene model=Glyma07g17140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGCTTTTCGTGTTTTTTCTTGCATGGGCTATGGCTCTTCTTGCTTCTTCCTTTGCTTCAGCTGCTGTAGTGGAACGCACTTTCAAAGTTCAAAACAAGACTATCAAACGCTTGTGCAATGAGCGAGTGATTGTCACGGTTAATGGAACATTCCCTGGGCCAAAGATTAATGTCCGTGAAGGTGACACTGTGATTGTTCATCTATTGAACGAGGGACCCTATAATATCACTATTCATTGGCATGGGGTGTTTCAGCTGTTTAGTGCATGGGCAGATGGTCCTGAATATGTAACTCAATGCACAATTAGTCCGGGAACTAAGTATACTTATAAATTCAATGTGACACAACAAGAAGGAACCTTATGGTGGCATGCTCATGCATCTGTTTTACGTGCCACTGTTCATGGTGCTTTCATCATTCACCCTCGTTCAGGGCAATTTCCCTTTCCTAAACCTTTCAAGCAAGTTCCCATTATATTAGGTGATTGGTATGATGCTAATGTTGTGGATGTTGAAACGCAAGCACTGGCCTCCGGTGGTCCTCCAAATGTATCTAATGCTTTCACAATCAACGGCTTGCCTGGCGATCTCTTCAATTGTTCTCGAACTCAGACATTCAAGATGAAGGTGAAGCAAGGAAAGACCTACATGCTACGAATGATCAATGCTGCACTCAATAACCATCTTTTCTTCAAGATAGCAAATCACACTTTCACAGTTGTTGCCTTGGATGCTGCATATACCGACCACTACATCACCGAAATCATTGTCATTGCCCCTGGCCAAACCATTGATGCACTATTCACAGCAAACCAACCCTTAGGTTCATACTATATGGCTGCATCTCCTTATTCTATTGGTGTTCCCGTCATTGACAACACGACGACACGTGGCATTGTCGTTTACGACTATGCACCACCACCATCATCATCAAAACCTTTGATGCCAACCCTACCACCTATAAACGACACAGCAACGGCTCACAAATTCTACAGCAACATAACTGGCAAGGTGGGGGCCCCACACTGGGTTCCTGTGCCAGCCAAAGTGGATGAGCACATGTTCATTACTATTGGATTAAACCTAGACACGTGTGATCCTAAGAATGCCACCAATGCCACGTGTCAGGGTCCATCTGGCCAGAGATTTTCTTCTAGCATGAACAACGAGTCCTTTGTGATTCCTAAGGGGAGAGGGTTCTCTATGTTGGAAGCGTTCTTTAAGAATGTGAGTGGAGTCTACACTGCTGATTTCCCTAACAACCCTCCGGTTATGTTTGACTTCACAAACCCTAATATTAGTTTTAACCCTAACCTTTTGTTTGCACCAAAATCAACCAAATCGAAGAAACTCAAGTTCAATTCAACCGTGGAGATTGTGTTTCAGAATACAGCGATTGTCGGTGTGCAGAACCATCCAATTCACATTCATGGTTTTAGTTTCCATGTTTTGGCTCAAGGGTTTGGAAATTTCAACTCCACCGTAGATTCAACCAAGTTTAATTTGGTGAATCCTCAGCTACGCAACACAATTGCTGTTCCTGTTGGAGGATGGGCTGTCATTAGATTCCAAGCAAACAATCCAGGGGTATGGTTTGTGCATTGCCATGTGGAAGATCATGTGCCATGGGGACTAGACATGGCTTTTGAGGTTGAGAATGGACCAACTTCTTCAACTTCACTCCCTCCACCACCTGTTGATCTGCCTAAATGTTAA
>Glyma07g17140.1 sequence type=predicted peptide gene model=Glyma07g17140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKLFVFFLAWAMALLASSFASAAVVERTFKVQNKTIKRLCNERVIVTVNGTFPGPKINVREGDTVIVHLLNEGPYNITIHWHGVFQLFSAWADGPEYVTQCTISPGTKYTYKFNVTQQEGTLWWHAHASVLRATVHGAFIIHPRSGQFPFPKPFKQVPIILGDWYDANVVDVETQALASGGPPNVSNAFTINGLPGDLFNCSRTQTFKMKVKQGKTYMLRMINAALNNHLFFKIANHTFTVVALDAAYTDHYITEIIVIAPGQTIDALFTANQPLGSYYMAASPYSIGVPVIDNTTTRGIVVYDYAPPPSSSKPLMPTLPPINDTATAHKFYSNITGKVGAPHWVPVPAKVDEHMFITIGLNLDTCDPKNATNATCQGPSGQRFSSSMNNESFVIPKGRGFSMLEAFFKNVSGVYTADFPNNPPVMFDFTNPNISFNPNLLFAPKSTKSKKLKFNSTVEIVFQNTAIVGVQNHPIHIHGFSFHVLAQGFGNFNSTVDSTKFNLVNPQLRNTIAVPVGGWAVIRFQANNPGVWFVHCHVEDHVPWGLDMAFEVENGPTSSTSLPPPPVDLPKC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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