Glyma07g16860 - SoyBase

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Report for Sequence Feature Glyma07g16860

Feature Type:	gene_model
Chromosome:	Gm07
Start:	16509757
stop:	16511822
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g16860

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G29420	AT	Annotation by Michelle Graham. TAIR10: glutathione S-transferase tau 7 \| chr2:12618111-12618871 REVERSE LENGTH=227	SoyBase	E_val: 7.00E-71	ISS
GO:0009407	GO-bp	Annotation by Michelle Graham. GO Biological Process: toxin catabolic process	SoyBase	N/A	ISS
GO:0009751	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus	SoyBase	N/A	ISS
GO:0010583	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0004364	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glutathione transferase activity	SoyBase	N/A	ISS
KOG0406	KOG	Glutathione S-transferase	JGI		ISS
PTHR11260	Panther	GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING	JGI		ISS
PTHR11260:SF16	Panther	GLUTATHIONE S-TRANSFERASE THETA	JGI		ISS
PF00043	PFAM	Glutathione S-transferase, C-terminal domain	JGI		ISS
PF02798	PFAM	Glutathione S-transferase, N-terminal domain	JGI		ISS
UniRef100_I1KK63	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KK63_SOYBN	SoyBase	E_val: 5.00E-158	ISS
UniRef100_Q9FQE7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glutathione S-transferase GST 11 n=1 Tax=Glycine max RepID=Q9FQE7_SOYBN	SoyBase	E_val: 1.00E-134	ISS

Expression Patterns of Glyma07g16860

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g16860

Paralog	Evidence	Comments
Glyma18g41350	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g16860 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g140200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g16860

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g16860

Limit To All Plant Sequences

>Glyma07g16860.1   sequence type=CDS   gene model=Glyma07g16860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCAAGTCAGGAAGAGGTGATCCTTTTGGGGGTTATTGGAAGCCCATTTCTGCACAGGGTGCAGATTGCTCTCAAATTGAAGGGAGTTGAATACAAATATTTGGAAGATGATTTGAACAACAAGAGTGATTTGCTCCTCAAGTATAACCCAGTTTATAAAATGATTCCAGTGTTTGTTCACAATGAAAAGCCCATATCCGAGTCCCTTGTGATTGTTGAGTACATCGATGACACATGGAAAAACAACCCCATCTTGCCTGATCCTTACCATAGAGCCTTGGCTCGTTTCTGGGCCAAGTTCATTGATGACAAGTGCGTGGCTCCAGCAGCGAAATCTGTTTTTATTGTTGATGAGAAAGAGAAAGAGAAGGCAAAAGAAGAATTATTTGAGGCTCTGAATTATCTTGAGAATGAGTTGAAGGGAAAGTTTTTTGGTGGAGATGAGTTTGGCTTTGTGGATATTGCTGCTGTGATCATACCTATAATTCAAGAGATAGCAGGGTTGCAATTGTTCCCAAGTGAGAAATTCCCAAAGCTCTCCAAATGGAGCCAAGACTTTTACAACCATCCACTTGTTAACCAAGTTATGCCTCCTAAGGACCAACTTTTTGCCTATTTCAAGGCTCGGGCTCAAAGCCTCGCTGCTAAAACAAAGAATTAA

Predicted protein sequences of Glyma07g16860

Limit To All Plant Sequences

>Glyma07g16860.1   sequence type=predicted peptide   gene model=Glyma07g16860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSQEEVILLGVIGSPFLHRVQIALKLKGVEYKYLEDDLNNKSDLLLKYNPVYKMIPVFVHNEKPISESLVIVEYIDDTWKNNPILPDPYHRALARFWAKFIDDKCVAPAAKSVFIVDEKEKEKAKEELFEALNYLENELKGKFFGGDEFGFVDIAAVIIPIIQEIAGLQLFPSEKFPKLSKWSQDFYNHPLVNQVMPPKDQLFAYFKARAQSLAAKTKN*

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