|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT1G52240 | AT | Annotation by Michelle Graham. TAIR10: RHO guanyl-nucleotide exchange factor 11 | chr1:19458844-19459235 REVERSE LENGTH=94 | SoyBase | E_val: 1.00E-27 | ISS |
GO:0000226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization | SoyBase | N/A | ISS |
GO:0007017 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule-based process | SoyBase | N/A | ISS |
GO:0009860 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen tube growth | SoyBase | N/A | ISS |
GO:0048364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root development | SoyBase | N/A | ISS |
GO:0080147 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root hair cell development | SoyBase | N/A | ISS |
GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
GO:0005875 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: microtubule associated complex | SoyBase | N/A | ISS |
GO:0005089 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: Rho guanyl-nucleotide exchange factor activity | SoyBase | N/A | ISS |
KOG3430 | KOG | Dynein light chain type 1 | JGI | ISS | |
PTHR11886 | Panther | DYNEIN LIGHT CHAIN | JGI | ISS | |
PTHR11886:SF22 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
PF01221 | PFAM | Dynein light chain type 1 | JGI | ISS | |
UniRef100_B9SV39 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cytoplasmic dynein light chain, putative n=1 Tax=Ricinus communis RepID=B9SV39_RICCO | SoyBase | E_val: 6.00E-29 | ISS |
UniRef100_I1KK47 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1KK47_SOYBN | SoyBase | E_val: 5.00E-78 | ISS |
Glyma07g16690 not represented in the dataset |
Glyma07g16690 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.07g138900 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g16690.2 sequence type=CDS gene model=Glyma07g16690 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTGGAAGGAAAAGCTGTGGTGAGAGAGACAGACATGCCAGAGGGAATGCAGAGCTATGTTATGGAATTAGCACACCAAGCTCTCGATGCACATGAAGTTTCTGATTGTCAGTCCATTGCTCATTTCATCAAACAGAAACTTGATGAAGCATATGGACCTGCTTGGAATTCCGTGGTTGGAAAAGACTTTGGATCTTGCATCACACATTTATGTGGAAGTTTCATATTCTTTCGTGTGGAGATGATGGAATTTCTGATCTTCAAAGATGGGAAGAATTTCACAGAAAGCAGGGAAGAAGCTATTGGAGTGCTGCAGAAGGCTAGAAATTGTGATTAG
>Glyma07g16690.2 sequence type=predicted peptide gene model=Glyma07g16690 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLEGKAVVRETDMPEGMQSYVMELAHQALDAHEVSDCQSIAHFIKQKLDEAYGPAWNSVVGKDFGSCITHLCGSFIFFRVEMMEFLIFKDGKNFTESREEAIGVLQKARNCD*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||