Glyma07g16521 - SoyBase

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Report for Sequence Feature Glyma07g16521

Feature Type:	gene_model
Chromosome:	Gm07
Start:	16205217
stop:	16206953
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g16521

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G36180	AT	Annotation by Michelle Graham. TAIR10: acetyl-CoA carboxylase 2 \| chr1:13546047-13558339 FORWARD LENGTH=2355	SoyBase	E_val: 1.00E-47	ISS
GO:0006633	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0003989	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acetyl-CoA carboxylase activity	SoyBase	N/A	ISS
GO:0004075	GO-mf	Annotation by Michelle Graham. GO Molecular Function: biotin carboxylase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016874	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ligase activity	SoyBase	N/A	ISS
GO:0046872	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metal ion binding	SoyBase	N/A	ISS
PF08326	PFAM	Acetyl-CoA carboxylase, central region	JGI		ISS
UniRef100_G8A394	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Acetyl-CoA carboxylase n=1 Tax=Medicago truncatula RepID=G8A394_MEDTR	SoyBase	E_val: 1.00E-50	ISS
UniRef100_UPI0002338528	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338528 related cluster n=1 Tax=unknown RepID=UPI0002338528	SoyBase	E_val: 2.00E-58	ISS

Expression Patterns of Glyma07g16521

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g16521 not represented in the dataset	Glyma07g16521 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma07g16521 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g137400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g16521

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g16521

Limit To All Plant Sequences

>Glyma07g16521.1   sequence type=CDS   gene model=Glyma07g16521   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAATGTGCATGCCTCTTCTTTCGCCTGCATCTGGGATTATTCATTTCAAAATGTCTGAAGGTCAAGCAATGCAGGCTGGTGAACTTATAGCAAGGCTTCATCTGGATGATCCTTCAACTGTAAGAAAGGCAGAACCCTTCACTGGGAGCTTCCCAGTTCTGGGACCTCCTACTGCAATTTCTGGTAAAGTTCATCAGAAATGCGCTGCAAGCTTAAATGCCGCACGGATGATTCTTTCTGGGTATGACCACAATATTGATGAAGGAATCAAGAGTAAAAATAAGTTGATCTTGCAACTGATGGATAAATTGGTATAA

Predicted protein sequences of Glyma07g16521

Limit To All Plant Sequences

>Glyma07g16521.1   sequence type=predicted peptide   gene model=Glyma07g16521   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKMCMPLLSPASGIIHFKMSEGQAMQAGELIARLHLDDPSTVRKAEPFTGSFPVLGPPTAISGKVHQKCAASLNAARMILSGYDHNIDEGIKSKNKLILQLMDKLV*

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