SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G37770 | AT | Annotation by Michelle Graham. TAIR10: NAD(P)-linked oxidoreductase superfamily protein | chr2:15834888-15836659 FORWARD LENGTH=315 | SoyBase | E_val: 2.00E-129 | ISS |
| GO:0009409 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cold | SoyBase | N/A | ISS |
| GO:0009414 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to water deprivation | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0004033 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: aldo-keto reductase (NADP) activity | SoyBase | N/A | ISS |
| GO:0008106 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: alcohol dehydrogenase (NADP+) activity | SoyBase | N/A | ISS |
| GO:0016229 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: steroid dehydrogenase activity | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| GO:0070401 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: NADP+ binding | SoyBase | N/A | ISS |
| KOG1577 | KOG | Aldo/keto reductase family proteins | JGI | ISS | |
| PTHR11732 | Panther | ALDO/KETO REDUCTASE | JGI | ISS | |
| PTHR11732:SF34 | Panther | 3-CHLOROBENZOATE-3,4-DIOXYGENASE DYHYDROGENASE-RELATED | JGI | ISS | |
| PF00248 | PFAM | Aldo/keto reductase family | JGI | ISS | |
| UniRef100_B9SV48 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Aldo-keto reductase, putative n=1 Tax=Ricinus communis RepID=B9SV48_RICCO | SoyBase | E_val: 4.00E-170 | ISS |
| UniRef100_UPI0002338527 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002338527 related cluster n=1 Tax=unknown RepID=UPI0002338527 | SoyBase | E_val: 0 | ISS |
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Glyma07g16500 not represented in the dataset |
Glyma07g16500 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma18g40761 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g137200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g16500.2 sequence type=CDS gene model=Glyma07g16500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACAAAGAAGCTACAAATGTTCCCCTACATTTTGATCTGAATACAGGTGCAAAGATCCCATCAGTTGGTCTTGGAACATGGGAAGCTCGTCGAGGTGTTGTGGGTGATGCTGTTATTGCTGCTGTCAAGGCTGGTTACAGGCACATAGATTGTGCTAGGATATATGATAATGAAAAAGAGATAGGGGAGGCTCTGAAAACACTGTTTTCTACTGGGGTAGTACATCGTAGTGAGATGATCAGTGACTGTGCACCTGAAGATGTCTCAAAGGCACTAACTAGGACTCTTGCGGACATGCAGCTTGACTACATTGATTTATATCTTATGCATTGGCCTTTTAGGACAAAGTTGGGTTCAAGAGGTTGGAACCCTGAGAATATGGCTCCCTTGTGTCTTCCAGAGACATGGAATGCAATGGAAGGTTTGTTTGCCTCGGGTCAGGCACGCGCAATCGGGGTGAGCAACTTTTCAACTAAGAAGCTACAAGACTTGCTTGGATATGCTAAGATTCCGCCAGCAGTTAACCAAGTTGAATGCCACCCAGTGTGGCAGCAACCGGCTCTTCACAATTTGTGCAAGTCTACCGGTGTTCATCTCACAGCATATTGTCCTTTAGGCTCTCCTGGGTCATGGGTAAAGGGGCAAGTCTTGAAGGAACCACTGTTGAAGGAAATTGCTGAAAAGCTTCACAAGTCTCCAGCGCAAGTGGCATTGCGTTGGGGGACTCCAAAGTGGATCAAGGAGAACCTTAGTTTATTTGATTGGTGCATTCCTCCTGAGCTACTCTCAAAATTATCACAGATTCACCAGCAAAGGTTACTTCGAAATGAATCTGCTGTCCATGAAACTTGTAGTCCTTACAAAAATCTTGAAGAATTGTGGGATGGAGAAATATGA
>Glyma07g16500.2 sequence type=predicted peptide gene model=Glyma07g16500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDKEATNVPLHFDLNTGAKIPSVGLGTWEARRGVVGDAVIAAVKAGYRHIDCARIYDNEKEIGEALKTLFSTGVVHRSEMISDCAPEDVSKALTRTLADMQLDYIDLYLMHWPFRTKLGSRGWNPENMAPLCLPETWNAMEGLFASGQARAIGVSNFSTKKLQDLLGYAKIPPAVNQVECHPVWQQPALHNLCKSTGVHLTAYCPLGSPGSWVKGQVLKEPLLKEIAEKLHKSPAQVALRWGTPKWIKENLSLFDWCIPPELLSKLSQIHQQRLLRNESAVHETCSPYKNLEELWDGEI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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