Glyma07g16260 - SoyBase

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Report for Sequence Feature Glyma07g16260

Feature Type:	gene_model
Chromosome:	Gm07
Start:	15950414
stop:	15952892
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g16260

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G37710	AT	Annotation by Michelle Graham. TAIR10: receptor lectin kinase \| chr2:15814934-15816961 REVERSE LENGTH=675	SoyBase	E_val: 0	ISS
GO:0000165	GO-bp	Annotation by Michelle Graham. GO Biological Process: MAPK cascade	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0006612	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane	SoyBase	N/A	ISS
GO:0006995	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to nitrogen starvation	SoyBase	N/A	ISS
GO:0009617	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to bacterium	SoyBase	N/A	ISS
GO:0009627	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance	SoyBase	N/A	ISS
GO:0009697	GO-bp	Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process	SoyBase	N/A	ISS
GO:0009751	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus	SoyBase	N/A	ISS
GO:0009862	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009867	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0010310	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process	SoyBase	N/A	ISS
GO:0010363	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0031347	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of defense response	SoyBase	N/A	ISS
GO:0031348	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response	SoyBase	N/A	ISS
GO:0035304	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation	SoyBase	N/A	ISS
GO:0042742	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium	SoyBase	N/A	ISS
GO:0043069	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death	SoyBase	N/A	ISS
GO:0045088	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of innate immune response	SoyBase	N/A	ISS
GO:0050832	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to fungus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF435	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
PF00139	PFAM	Legume lectin domain	JGI		ISS
UniRef100_Q6UY59	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Lectin-like receptor kinase 7;2 n=1 Tax=Medicago truncatula RepID=Q6UY59_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002338D8A	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338D8A related cluster n=1 Tax=unknown RepID=UPI0002338D8A	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g16260

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g16260

Paralog	Evidence	Comments
Glyma18g40290	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g16260 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g135400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g16260

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g16260

Limit To All Plant Sequences

>Glyma07g16260.1   sequence type=CDS   gene model=Glyma07g16260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCTCAAGGTTGTAACAGTGGTGTTTTTGCTGGCAACAATAGTAGTAGCCAGTGATTACACTAGTTTCACCTATAATGGATTCCAATCTTCTCATTTGTACCTTGATGGCAGTGCTGAGTTCACCACCAATGGCATGGTTAAGCTCACCAATCACACCAAGCAACAAAAGGGTCATGCTTTCTTCCCAAGTCCAATAGTCTTCAAGAACACCACAAATGGAAGTGTGTTTTCTTTCTCCACCACTTTTGTTTTTGCCATAAGGTCTGAGTTTCCCAATTTGAGTGGCCATGGGATTGCCTTTGTGGTTTCTCCAACAAAAGAGGTTCCACATTCTCTTCCAAGCCAGTACCTTGGCCTCTTTGATGACACAAACAACGGCAACAACAGCAACCATGTTTTTGGGGTGGAGCTTGATACCATTCTGAACACCGAGTTTGGTGATATCAATGACAACCATGTTGGGATTGATGTCAATGAATTGAAGTCGGTTAAATCGGCTTCTGCAGGGTATTACAGTGATGGGGGGTTTAAGAATTTGAGTCTCATCAGTGGCTACCCAATGCAGGTTTGGGTGGAATATGATGGCCTAAAGAAGCAGATTGATGTTACTTTAGCTCCAATCAATGTCGGTAAACCGGAACGCCCTTTGTTATCATTGAACAAAGATCTTTCTCGAATTCTGAACAGCAGCATGTATGTTGGATTCACTTCTTCAACTGGGTCAATTCTAAGTTCTCATTATGTTTTGGGTTGGAGCTTTAAGGTGAATGGCAAGGCTCAACAACTTGCAATCTCTGAACTCCCCATGCTACCTAGACTAGTTGGTAAACAAGAGTCAAAGGTTCTCATAGTAGGGTTGCCTCTGATATTACTAATTTTGATTCTCATGGTGGCTCTAGCAGTGGTTCATGCCATCAAGAGGAAGAAGTTTGTGGAGCTGCTTGAAGATTGGGAGCAAGACTATGGTCCTCATAGGTTCAAGTACAAAGATCTTAGCCTAGCAACAAAGGGGTTCAGGGAGAAGGAGTTATTGGGGAGTGGTGGATTTGGTAGAGTCTACAAAGGGGTGATGCCAATTTCGAAGATTGAGGTTGCAGTGAAGAAGGTGTCACATGAATCAAGGCAAGGGATGAGGGAATTTGTGGCGGAAATCGCTAGCATTGGCCGTCTTAGGCACCGGAATCTGGTTCCCCTTCTCGGGTACTGCAGGCGCAAAGGAGAGTTGCTGTTGGTCTATGACTACATGCCAAATGGAAGCCTTGACAAGTATCTCTACAACAAACCAAGAGTGACCTTAAATTGGAGCCAGAGATTTAGAATCACCAAAGGGGTTGCTTCAGGTTTGTTTTATCTGCATGAGGAATGGGAGCAAGTTGTGCTCCACAGAGACATTAAGGCTAGCAATGTGCTACTTGATGCTGAATTGAATGGGAGATTAGGGGACTTTGGTCTTTCAAGGTTGTATGAACATGGAACTGACCCTCACACTACTCATGTGGTTGGAACTCTTGGTTATCTTGCACCTGAGCACACTAGAACAGGTAAGGCCACTACAAGCTCCGATGTGTTTGCTTTTGGTGCATTTATGCTAGAGGTTGTGTGTGGAAGGAGACCAATAGAGCAAGGAAGGGAATCCGGGAGCGAAATTCTGGTCGATTGGGTGTATAATTGTTGGAAAAAGGGTGAGATTCTCGAGGCAAGGGATCCAAACTTGGGCGCAAATTATAGGCCAGATGAGGTGGAATTGGTGTTGAAACTCGCCTTGTTGTGCTCACATTCTGAGCCTTTGGCTAGGCCAAGCATGCGCCAGGTTGTGCAATACTTGGAGAAAGATGTGCCTCTGCCAGATTTGTCTATGCTTAGCTTATCTTCAATTGGCTTAACTTTTGGTCTGCATGAAGACTTTCAGGACTGTCCAATGTCTTATCCTTCATCTATGGATAGGCCAATATCTCATACTTCTTCGATTGCTGAATCACTTCTCTCTGGGGGTCGTTGA

Predicted protein sequences of Glyma07g16260

Limit To All Plant Sequences

>Glyma07g16260.1   sequence type=predicted peptide   gene model=Glyma07g16260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLKVVTVVFLLATIVVASDYTSFTYNGFQSSHLYLDGSAEFTTNGMVKLTNHTKQQKGHAFFPSPIVFKNTTNGSVFSFSTTFVFAIRSEFPNLSGHGIAFVVSPTKEVPHSLPSQYLGLFDDTNNGNNSNHVFGVELDTILNTEFGDINDNHVGIDVNELKSVKSASAGYYSDGGFKNLSLISGYPMQVWVEYDGLKKQIDVTLAPINVGKPERPLLSLNKDLSRILNSSMYVGFTSSTGSILSSHYVLGWSFKVNGKAQQLAISELPMLPRLVGKQESKVLIVGLPLILLILILMVALAVVHAIKRKKFVELLEDWEQDYGPHRFKYKDLSLATKGFREKELLGSGGFGRVYKGVMPISKIEVAVKKVSHESRQGMREFVAEIASIGRLRHRNLVPLLGYCRRKGELLLVYDYMPNGSLDKYLYNKPRVTLNWSQRFRITKGVASGLFYLHEEWEQVVLHRDIKASNVLLDAELNGRLGDFGLSRLYEHGTDPHTTHVVGTLGYLAPEHTRTGKATTSSDVFAFGAFMLEVVCGRRPIEQGRESGSEILVDWVYNCWKKGEILEARDPNLGANYRPDEVELVLKLALLCSHSEPLARPSMRQVVQYLEKDVPLPDLSMLSLSSIGLTFGLHEDFQDCPMSYPSSMDRPISHTSSIAESLLSGGR*

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