Glyma07g16250 - SoyBase

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Report for Sequence Feature Glyma07g16250

Feature Type:	gene_model
Chromosome:	Gm07
Start:	15946549
stop:	15947728
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g16250

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G02120	AT	Annotation by Michelle Graham. TAIR10: one helix protein \| chr5:419144-419633 FORWARD LENGTH=110	SoyBase	E_val: 3.00E-17	ISS
GO:0009637	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to blue light	SoyBase	N/A	ISS
GO:0009644	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to high light intensity	SoyBase	N/A	ISS
GO:0009744	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus	SoyBase	N/A	ISS
GO:0010114	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to red light	SoyBase	N/A	ISS
GO:0010155	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of proton transport	SoyBase	N/A	ISS
GO:0010207	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosystem II assembly	SoyBase	N/A	ISS
GO:0010218	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to far red light	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_B9SZY4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: OHP, putative n=1 Tax=Ricinus communis RepID=B9SZY4_RICCO	SoyBase	E_val: 2.00E-19	ISS
UniRef100_I1KK18	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KK18_SOYBN	SoyBase	E_val: 8.00E-62	ISS

Expression Patterns of Glyma07g16250

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g16250 not represented in the dataset	Glyma07g16250 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g16250

Paralog	Evidence	Comments
Glyma18g40280	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g16250 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g135300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g16250

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g16250

Limit To All Plant Sequences

>Glyma07g16250.3   sequence type=transcript   gene model=Glyma07g16250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAAATTGAAAATGTAATAGATAAGGCGCAGGGACACAACACAAGGAATGGTCTTGGTGTGAACCATAGCCATGGCTACTTCATCAACCACATTATTGCTATCATCACTCATACCTGCAAGCATCCCATCATTCAACTCTGGAAACCATTCAGTTTTTTTGCTTCAAAACCGTTCTTTGAATCGACCCAAGAAGAGAGTTTCCTTCGTTGTTCAAGCAGCCAAGCCCCCTATTGGTCAATTGGGCATGTTTGTTTCTTCAGGTGGAAATTCCAAAGGTGCAGCCTCAATTTAAGCCTCCGTTTCTTGGGTTCACTAAGACTGCAGAAGTATGGAACTCTAGAGCTTGCATGATTGGAATCATTGGAGTTTTTATTGTAGAGTTTATAATAAACAAGGGCATACTTCAAGTGATTGGGGTTGATGTTGGCAAAGGCCTTAATATTCCTCTCTGAACATTATTTTTGGCTGTGCTCGTAAATGTTGTCATATATAAAGTCAATGTTTTAACCTTTTTTCTTATTGATCTCAAGAACAATTTTTCAAATTGCCGTGTCATTTGAAAATCTTCTGTAATCTAATATCTGTATTGAGGTATATTTCTGATATTCTTGGGTTGACTTGTTGGTTTGGTATCTGGAACTCGAAACTGCCTGTCAAGCTATTTACGAAGTTATTCATCAATTTGAATTGTTTTACCAAATGTTATGCAACGAAAAGAGATATAAGAAGCGAAGACAGAGTATGAGATGAGATGGGATATGAATTTGTTATATA

Coding sequences of Glyma07g16250

Limit To All Plant Sequences

>Glyma07g16250.2   sequence type=CDS   gene model=Glyma07g16250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTACTTCATCAACCACATTATTGCTATCATCACTCATACCTGCAAGCATCCCATCATTCAACTCTGGAAACCATTCAGTTTTTTTGCTTCAAAACCGTTCTTTGAATCGACCCAAGAAGAGAGTTTCCTTCGTTGTTCAAGCAGCCAAGCCCCCTATTGGTGTGGAAATTCCAAAGGTGCAGCCTCAATTTAAGCCTCCGTTTCTTGGGTTCACTAAGACTGCAGAAATAATAAACAAGGGCATACTTCAAGTGATTGGGGTTGATGTTGGCAAAGGCCTTAATATTCCTCTCTGA

>Glyma07g16250.3   sequence type=CDS   gene model=Glyma07g16250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTACTTCATCAACCACATTATTGCTATCATCACTCATACCTGCAAGCATCCCATCATTCAACTCTGGAAACCATTCAGTTTTTTTGCTTCAAAACCGTTCTTTGAATCGACCCAAGAAGAGAGTTTCCTTCGTTGTTCAAGCAGCCAAGCCCCCTATTGGTCAATTGGGCATGTTTGTTTCTTCAGGTGGAAATTCCAAAGGTGCAGCCTCAATTTAA

Predicted protein sequences of Glyma07g16250

Limit To All Plant Sequences

>Glyma07g16250.2   sequence type=predicted peptide   gene model=Glyma07g16250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATSSTTLLLSSLIPASIPSFNSGNHSVFLLQNRSLNRPKKRVSFVVQAAKPPIGVEIPKVQPQFKPPFLGFTKTAEIINKGILQVIGVDVGKGLNIPL*

>Glyma07g16250.3   sequence type=predicted peptide   gene model=Glyma07g16250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATSSTTLLLSSLIPASIPSFNSGNHSVFLLQNRSLNRPKKRVSFVVQAAKPPIGQLGMFVSSGGNSKGAASI*

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