Glyma07g16070 - SoyBase

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Report for Sequence Feature Glyma07g16070

Feature Type:	gene_model
Chromosome:	Gm07
Start:	15787451
stop:	15791758
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g16070

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
UniRef100_E4MX01	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: mRNA, clone: RTFL01-13-G07 n=1 Tax=Eutrema halophilum RepID=E4MX01_THEHA	SoyBase	E_val: 9.00E-10	ISS
UniRef100_I1KK08	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KK08_SOYBN	SoyBase	E_val: 5.00E-166	ISS

Expression Patterns of Glyma07g16070

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g16070

Paralog	Evidence	Comments
Glyma18g40060	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g16070 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g134000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g16070

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g16070

Limit To All Plant Sequences

>Glyma07g16070.1   sequence type=CDS   gene model=Glyma07g16070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAAAGCAAGAAAAACCCTTCTCAACTTAACAGATTCCAGGATGATGGAATGCACGATCTTGACATAGTTGAATGGAAAAAGAAAAGAAAATTACAGAGTGATCAGTTGGATTTGATTAGACCTAAACATAAATGCTGGGTTGGAAGTTTCTCCTCTGAACATGCTTCAGTGTTTGATAAAAATCCAGTTTTAGAGAGCATGCACAACCACACAGTTGAAAGCTCCAAACATGAATCTGCCAAAGACAGCAATAGTTTTATGGAAGACTGTGATACTGCCATGTCTGTAAATGAAGAAGCCAAACACGAGACAGATTGTGGAAGTTCATACTTATATGTAAATAGGGTAAGCTATATCGATGAGGAAGCATTTGTTGATAGCCAATGCATTCCACCTTATGATGATGCCGATGCACAAGCTTTGATCAATCATGAGGAACACTTTCTGGGGTTAGGAAGCTTTTCAGGTCATGAATGCTCAGAAGATGCTGAAGACAGCAATGAGGACCCTGTAGAGAAGGAATTCGAAGATTTTCTTTATTCCAGTGGGGTGAATCCTAATGTGTATGTCCTTTCATCTGGAAGATGGGATGTAAATCAAGAAGCTCAATCAAGCTCAAGACCACCAACAATTGATCAAGAGTTTGAGGAGTACTTTTCTATGCTTATGCTCTAG

Predicted protein sequences of Glyma07g16070

Limit To All Plant Sequences

>Glyma07g16070.1   sequence type=predicted peptide   gene model=Glyma07g16070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEESKKNPSQLNRFQDDGMHDLDIVEWKKKRKLQSDQLDLIRPKHKCWVGSFSSEHASVFDKNPVLESMHNHTVESSKHESAKDSNSFMEDCDTAMSVNEEAKHETDCGSSYLYVNRVSYIDEEAFVDSQCIPPYDDADAQALINHEEHFLGLGSFSGHECSEDAEDSNEDPVEKEFEDFLYSSGVNPNVYVLSSGRWDVNQEAQSSSRPPTIDQEFEEYFSMLML*

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