Glyma07g16060 - SoyBase

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Report for Sequence Feature Glyma07g16060

Feature Type:	gene_model
Chromosome:	Gm07
Start:	15781837
stop:	15786211
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g16060

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G60020	AT	Annotation by Michelle Graham. TAIR10: laccase 17 \| chr5:24168072-24170223 FORWARD LENGTH=577	SoyBase	E_val: 0	ISS
GO:0009698	GO-bp	Annotation by Michelle Graham. GO Biological Process: phenylpropanoid metabolic process	SoyBase	N/A	ISS
GO:0009809	GO-bp	Annotation by Michelle Graham. GO Biological Process: lignin biosynthetic process	SoyBase	N/A	ISS
GO:0009832	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis	SoyBase	N/A	ISS
GO:0010413	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process	SoyBase	N/A	ISS
GO:0045492	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process	SoyBase	N/A	ISS
GO:0046274	GO-bp	Annotation by Michelle Graham. GO Biological Process: lignin catabolic process	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0048046	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apoplast	SoyBase	N/A	ISS
GO:0005507	GO-mf	Annotation by Michelle Graham. GO Molecular Function: copper ion binding	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0052716	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydroquinone:oxygen oxidoreductase activity	SoyBase	N/A	ISS
KOG1263	KOG	Multicopper oxidases	JGI		ISS
PTHR11709	Panther	MULTI-COPPER OXIDASE	JGI		ISS
PTHR11709:SF9	Panther	LACCASE	JGI		ISS
PF00394	PFAM	Multicopper oxidase	JGI		ISS
PF07731	PFAM	Multicopper oxidase	JGI		ISS
PF07732	PFAM	Multicopper oxidase	JGI		ISS
UniRef100_B9HBS9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Laccase 110b n=1 Tax=Populus trichocarpa RepID=B9HBS9_POPTR	SoyBase	E_val: 0	ISS
UniRef100_I1KK07	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KK07_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g16060

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g16060

Paralog	Evidence	Comments
Glyma18g40050	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g16060 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g133900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g16060

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g16060

Limit To All Plant Sequences

>Glyma07g16060.1   sequence type=CDS   gene model=Glyma07g16060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTCCCCCCACTTTCCTTCATTTGCATCTCTCAGAGTTCTTCTGTTTGGTTTCTGCGTTATAACTTTGTTTCCTGAGTTTGTAGTGAGCATAACAAGGCACTACACATTTAATGTGGAGTACCTGAACGTCACTAGATTGTGCCACACAAGGAACATTCTGAGTGTGAATGGGAAATTCCCAGGACCTCGCTTGGTGGCAAGGGAAGGTGATAGGGTTGTGGTTAAGGTGGTTAACCATGTCTCAAACAATGTATCCATTCATTGGCATGGCATCCGTCAGATAACAACTGGGTGGGCTGATGGACCAGCATATGTGACACAGTGCCCCATACAAACCAACCAGTCATACACATACAACTTCACCATAGTTGGGCAGAGAGGGACTCTGCTTTGGCATGCTCACATATCATGGCTGAGAGCAACCATCTATGGACCCATCATCATCCTCCCCAAGCACAATGAGTCTTTTCCATTCGAGAAGCCACACAAAGAAATCCCCATACTTTTTGGGGAATGGTTTAATGTTGACCCAGAAGCAGTCATAAGTCAAGCCTTGCAGACAGGAGGGGGACCCAATGTTTCAGATGCATACACCATCAATGGACTTCCCGGGCCTTTGTATAATTGTTCTTCTAAAGATACATACACATTAAAGGTGAAGCCAGGCAAGACATATCTGCTAAGACTAATCAATGCTGCACTCAACGAAGAGCTTTTCTTCAGCATAGCCAACCACACCCTAACTGTGGTTGAAGCAGATGCCAGATACACCAAACCATTTGACACAGACACACTCCTCATAGCCCCTGGCCAAACCACAAACGTGCTTCTCAAAACCAAGCCATATTTTCCCAATGCCACATTCCAAATGTCTGCTAGGCCTTATTTCACAGGCCGTGGCACCTTTGACAACTCCACAACTGCAGGTACCCTAATCTACAAGCAACCCTTGAAAAATTCCAGTGTAAAAAATCTCACCCTTCTCAAACCAACTTTGCCACCAATAAATGCCACAAGCTTTGTGGCAAACTTCACAGCAAAATTCAGAAGCTTGGCTAGTGCCAAATTCCCTGCCAAGGTACCTCAAAAAGTGGACAGAAAATTTTTCTTCACTGTGGGGCTAGGGACTAGTCCTTGCCCCAAAAACACAACATGCCAAGGGCCAAGTAATAACACCAAGTTCGCAGCCTCGGTTAACAACATTTCTTTTGCACTTCCATCATCTGTTTCCATCATGCAGGCCTACTATTCAGGCCAGGCCAATGGGGTTTTCAAGACTGATTTTCCTGCCACCCCTTTGAACCCTTTCAATTACACCGGAACGCCTCCGAACAACACAATGGTCACCAATGACACAAAGCTGGTGGTGCTCAAATTCAACACCAGTGTGGAGGTGGTGCTGCAGGATACTAGTATTCTTGGTGCTGAGAGTCACCCTTTGCATCTTCATGGCTACGACTTCTTTATTGTTGGGCAAGGGTTTGGAAACTATGACCCCAACAATGACCCTGCAAAGTTTAACCTGATTGACCCTGTTGAGAGGAACACTGTTGGTGTTCCTGCTGGTGGCTGGATTGCTTTTAGATTCCTTGCAGACAACCCAGGGGTGTGGTTCATGCACTGTCACTTGGACCTCCACACAAGTTGGGGATTGAGAATGGCATGGCTAGTACTAGATGGGCCTGGGCCCAAGCAGAAGCTTCAACCACCCCCTTCTGATCTTCCAAAATGCTGA

Predicted protein sequences of Glyma07g16060

Limit To All Plant Sequences

>Glyma07g16060.1   sequence type=predicted peptide   gene model=Glyma07g16060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSPHFPSFASLRVLLFGFCVITLFPEFVVSITRHYTFNVEYLNVTRLCHTRNILSVNGKFPGPRLVAREGDRVVVKVVNHVSNNVSIHWHGIRQITTGWADGPAYVTQCPIQTNQSYTYNFTIVGQRGTLLWHAHISWLRATIYGPIIILPKHNESFPFEKPHKEIPILFGEWFNVDPEAVISQALQTGGGPNVSDAYTINGLPGPLYNCSSKDTYTLKVKPGKTYLLRLINAALNEELFFSIANHTLTVVEADARYTKPFDTDTLLIAPGQTTNVLLKTKPYFPNATFQMSARPYFTGRGTFDNSTTAGTLIYKQPLKNSSVKNLTLLKPTLPPINATSFVANFTAKFRSLASAKFPAKVPQKVDRKFFFTVGLGTSPCPKNTTCQGPSNNTKFAASVNNISFALPSSVSIMQAYYSGQANGVFKTDFPATPLNPFNYTGTPPNNTMVTNDTKLVVLKFNTSVEVVLQDTSILGAESHPLHLHGYDFFIVGQGFGNYDPNNDPAKFNLIDPVERNTVGVPAGGWIAFRFLADNPGVWFMHCHLDLHTSWGLRMAWLVLDGPGPKQKLQPPPSDLPKC*

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