Glyma07g16040 - SoyBase

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Report for Sequence Feature Glyma07g16040

Feature Type:	gene_model
Chromosome:	Gm07
Start:	15749729
stop:	15753195
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g16040

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G43290	AT	Annotation by Michelle Graham. TAIR10: WRKY DNA-binding protein 49 \| chr5:17371987-17373083 REVERSE LENGTH=274	SoyBase	E_val: 4.00E-54	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PF03106	PFAM	WRKY DNA -binding domain	JGI		ISS
UniRef100_G1ESZ7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WRKY32 n=1 Tax=(Populus tomentosa x P. bolleana) x P. tomentosa RepID=G1ESZ7_9ROSI	SoyBase	E_val: 3.00E-90	ISS
UniRef100_UPI000233E273	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E273 related cluster n=1 Tax=unknown RepID=UPI000233E273	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma07g16040

Locus	Gene Symbol	Protein Name
	WRKY108	WRKY Transcription Factor

Expression Patterns of Glyma07g16040

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g16040

Paralog	Evidence	Comments
Glyma18g39970	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g16040 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g133700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g16040

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g16040

Limit To All Plant Sequences

>Glyma07g16040.2   sequence type=CDS   gene model=Glyma07g16040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGAGTCTGCCATGTCAAAGACAATGATGGAGGAAGTAGTAATGGCAAGTTCTTGGTCAGAGGGGTCAGAGGATGATGACCTTGTGAGAGAGCTTTTAGATGATGGGTCTCCCCTTCTTATTGAACCCCCCAACACAACAACAAAATTAGCCTCTTCAAGTGATGACCAAGACCAAGCCTTTAATAGGTTCATCTCCAACATTTACTCAGGACCTACCATCTCAGATATTGAAAATGCTTTGTCAGTGACCAACCAAAGAGATCACCACTTCCCACAACTCTCATCAGCCAGAGTTTCCATATTGGAAAGGGGTTTGAGTAAGATTGAGAATAAGTATACCCTGAAAATCAAATGCTTTGGCAATGGGATGGGTGATGATGGATATAAGTGGAGAAAGTATGGACAGAAATCCATTAAGAATAGCCCAAATCCTAGGAGTTACTATAGGTGCACCAACCCAAGGTGCAGTGCCAAGAAGCAAGTTGAGAGATCCAATGAGGACCCAGACACTCTTATCATAACCTATGAAGGGCTCCACTTGCACTTTGCTTACCCATATTTCCTCATGGGCCAACAACAGCAATCTCATTCCTACCCACCAATCAAGAAGTCCAAGCCCACCTCTCCACAGGCCCAGGACCAAACCCATAGAGCAGACTATGTTCATGAAGCCCATCAGACAGAAGAAGCCCAATCAAATGCTACTATGGGTGTGATGCCATCATCCACTTCATTGGACTCTACACTAGACATGGCCCAAGAAAGTTTGGGCTCACAAGGGTTGCTTGAAGATATGGTGCCATTCATGGTTCGGAACCCCTCAAACAATGTCAATAGTGCTCATACAAAATTCTCTTGTTCTTCATACCGTTCTCCTCCAACATCACCTCTTTGGGCTTCAACTTACTCCACCACTTGCTATACCGTTGGCTTAAATTCTAGCACTTAG

Predicted protein sequences of Glyma07g16040

Limit To All Plant Sequences

>Glyma07g16040.2   sequence type=predicted peptide   gene model=Glyma07g16040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVESAMSKTMMEEVVMASSWSEGSEDDDLVRELLDDGSPLLIEPPNTTTKLASSSDDQDQAFNRFISNIYSGPTISDIENALSVTNQRDHHFPQLSSARVSILERGLSKIENKYTLKIKCFGNGMGDDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCSAKKQVERSNEDPDTLIITYEGLHLHFAYPYFLMGQQQQSHSYPPIKKSKPTSPQAQDQTHRADYVHEAHQTEEAQSNATMGVMPSSTSLDSTLDMAQESLGSQGLLEDMVPFMVRNPSNNVNSAHTKFSCSSYRSPPTSPLWASTYSTTCYTVGLNSST*

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