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Report for Sequence Feature Glyma07g16030

Feature Type:gene_model
Chromosome:Gm07
Start:15744351
stop:15745450
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma07g16030
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G29880AT Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27260.1); Has 260 Blast hits to 212 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 10; Plants - 240; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). | chr2:12742536-12743545 FORWARD LENGTH=308 SoyBaseE_val: 2.00E-58ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1KK04UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KK04_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma07g16030
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma07g16030 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g133600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma07g16030
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma07g16030
>Glyma07g16030.1   sequence type=CDS   gene model=Glyma07g16030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGGATTCACAAGAAAATAACAAAGGAAAGAGTAGAGACAAAGATAATTATGTATCTTGGACTATGGAGGATACCAATGAGTTGTTGCACCTCTTGGTGGATGCTATGAATAAGGGATTGCGTGATGTCAATGGGTCACTTAGCAAACAAAATGTAGAACGAATAATACTTCCTCAACTCAATGCAAAAACTAAATTCCCTAAAACTTATAGTCATTATTTGAGTCGGATGAAGTGGTTTCGAAACCAGTATAACATGATGTCAACCCTTATGCGCAACAACTCTGGCTTTGGATGGGACCCAATTGGAAAAACTTTCAGTGCTCATGAGGATGTATGGAAAGATTACTTAAAGTCTCACCCAAGTCACAGCAAACTTCGAGGAAAAAGTATGGTTGATTATGAGTATTTGAAGATCGTTGTTGGGGGTGGAGTTTCTAGCGGGAATAATTCTATATCAGTCGATCCAGATGATACTGATGCAACAACTTTTGAGCCAGAAAATAGAACTGTTGGGATAGAAGAATTTTCATATGATCCTAATAATTCAGAGGTTCCCATAGAAAAACAAAACTGTCACAAGCGAAGGAGATCCGAGTATGGAGGGAGTTCAAGCGCTGTTGGGATCAACAATCAAGGCAACGTTCTGGAAAATCTTTTTGTTGGCATTGGGACTATTGCTGTGAATTTTGAAAAAATATCCAACATGATGGAAAAAAGAGAAAAAGATAGAGATAGAGATAGAGAGCTCGAGGGTATTATTTGGGATGTTATAAAAGAAATTCCAAATTTGGATGACATAACGCGTTTCAAGACAGCTGAATTGTTAAATACTAAAGCAAAAAAGGATTTTTTCTTGAAGATGTCACCGGAAGAACGCTCATCTTGGATAAACTTTAAGTTAGGGAATAATTAA
Predicted protein sequences of Glyma07g16030
>Glyma07g16030.1   sequence type=predicted peptide   gene model=Glyma07g16030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGDSQENNKGKSRDKDNYVSWTMEDTNELLHLLVDAMNKGLRDVNGSLSKQNVERIILPQLNAKTKFPKTYSHYLSRMKWFRNQYNMMSTLMRNNSGFGWDPIGKTFSAHEDVWKDYLKSHPSHSKLRGKSMVDYEYLKIVVGGGVSSGNNSISVDPDDTDATTFEPENRTVGIEEFSYDPNNSEVPIEKQNCHKRRRSEYGGSSSAVGINNQGNVLENLFVGIGTIAVNFEKISNMMEKREKDRDRDRELEGIIWDVIKEIPNLDDITRFKTAELLNTKAKKDFFLKMSPEERSSWINFKLGNN*






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