Glyma07g16020 - SoyBase

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Report for Sequence Feature Glyma07g16020

Feature Type:	gene_model
Chromosome:	Gm07
Start:	15722858
stop:	15726460
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g16020

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G02230	AT	Annotation by Michelle Graham. TAIR10: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein \| chr5:449132-450507 FORWARD LENGTH=280	SoyBase	E_val: 2.00E-137	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
KOG3109	KOG	Haloacid dehalogenase-like hydrolase	JGI		ISS
PTHR12725	Panther	HALOACID DEHALOGENASE-LIKE HYDROLASE	JGI		ISS
PTHR12725:SF15	Panther	PREDICTED PROTEIN (FRAGMENT)	JGI		ISS
PTHR18901	Panther	2-DEOXYGLUCOSE-6-PHOSPHATE PHOSPHATASE 2	JGI		ISS
UniRef100_B6TKR3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Catalytic/ hydrolase n=2 Tax=Zea mays RepID=B6TKR3_MAIZE	SoyBase	E_val: 5.00E-134	ISS
UniRef100_C6TFD5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TFD5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g16020

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g16020

Paralog	Evidence	Comments
Glyma18g39960	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g16020 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g133500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g16020

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g16020

Limit To All Plant Sequences

>Glyma07g16020.2   sequence type=transcript   gene model=Glyma07g16020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CATAAACTCTGTTCAAAGGATTTTAATAATTTGTTTCTGGCTTAGACCATTCCATGATTGCTCTCCTTTCTTGGGGGTCCATTTTTTTTTCTCAGTTTATAATTATAATAATTGAAGCTTTTGAACCCTCTCATGTTTCATTAAATTCTGTGCCCTCAAAGGGGTACTGTTGAACCATTTTTTTTAATCTATTTACTTGGCTGTGGATTGTCCACTCAGAATCTTTACAAAGCTTTATCTCCAATGGATTTGATTACCACTTTGATTGTCTTCCTTTATGATGCTTTAGCTTCTTTCAGTGCTAATCCGAGTTAACAAGACCAAATTTTAAAATTAAAAAAATGGAAAACCAGTGACATTTGTTGGTTGAGAATCACAATGAATTCCCATATAAATATTGATTGGTTCATGTGGTTATGCATCATAGTGCTCACTTCCTTTTGTTGTTGTGTCTTTTAAGGTTTTCTGCCTGAAATGGAGTACATGAACCAGAGACCAAAATATGATTGCCTTCTTTTTGATTTAGATGATACTTTGTATCCACTAAGCACTGGTCTTGCAAAAGCATGTGGCCAAAACATTAAAGACTATATGGCCGAAAAGCTTGGCATAGAGAAAAGCAAAATTGATGACTTGTCCAACCTCCTCTACAAGAACTATGGAACAACTATGGCTGGTTTAAGGGCAATTGGATATGACTTTGACTACGATGAATATCACAGTTTTGTTCATGGGAGATTACCTTATGAGAATTTGAAACCAGACCCAGTTCTGAGGAACCTCTTGCTGAGCCTACCCTATAGGAGACTGATCTTCACAAACTCAGACAAAGTCCATGCAGTTAAGGCACTAAGCAGGCTAGGATTAGAAGACTGCTTTGAAGGAATCATATGCTTTGAGACCCTTAATCCCATCCACAAAAGCACTGTCTCTGATGATGAAGATGACATTGAATTTGTGGGGGGTTCAGGCACAACCAATCCAACCACAAAAAAAGATGCTAGCAGCTTTCAAATCTTTGACATCATTGGCCATTTTGCTCAACCCAATCCCCACACAGTTTTGCCAAAGACACCAATTATTTGCAAACCATCAGAAAATGCCATTGAGTTGGCCCTCAAGATAGCCAACCTTAATCCACAAAGAACTTTGTTCTTTGAGGATAGTGTCCGCAACACACAAGCTGGAAAACGTGTGGGTCTTCACACTGTGCTGGTTGGAAAATCTCAGAGAATTAAAGGAGCAGATTATGCATTAGAAAGCATCCACAACCTTAGGGAGGCAGTGCCAGAACTATGGGAAGATGACATAAAATCAGAAGTTGCTTATCCTGGCAAGCTTGCTGTGGAGACATCTGTGACTGCTTAGATCATTGATGAACAAAAAAATAAAATAAAAAAATAAGAAAAAGAGAGAGAAAGAGAGAAGTCCTTTGTGAATTTCCCGAGTTGGGATGTAGTAATTGTATGTAGTTGATGTAGATGCTTTGATCATATTACAATTATAATAAAATAATATGTGTAGTTGACGTAGATGCTTTGATAAGATAATAATAAAAAATTAATATAAAATATTAAATTCTCCATTTGGGCCTAGCGTTCATATATATATGTATATTTTTCCGTCGTCTCCATCAACTGAGGAAGATTTGCTTTGCATTAAAGCGCAAGAGAAAAAAAAA

>Glyma07g16020.3   sequence type=transcript   gene model=Glyma07g16020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATTAATCTAATATTATAGCCATATAAGCCAATGGTGCACTTGTCCATCTATAAATACTCATCATTGCCTTAGCTTTTTTCCTCCCCCTCCTCCTTTCATCTTTCAATACAATATTGCTCTCTAAGCTTTGATTCTTCTTAATTCATACCCTTCCCACACTCATTCATTGTTGTGCGTCTGGTTTTCTGCCTGAAATGGAGTACATGAACCAGAGACCAAAATATGATTGCCTTCTTTTTGATTTAGATGATACTTTGTATCCACTAAGCACTGGTCTTGCAAAAGCATGTGGCCAAAACATTAAAGACTATATGGCCGAAAAGCTTGGCATAGAGAAAAGCAAAATTGATGACTTGTCCAACCTCCTCTACAAGAACTATGGAACAACTATGGCTGGTTTAAGGGCAATTGGATATGACTTTGACTACGATGAATATCACAGTTTTGTTCATGGGAGATTACCTTATGAGAATTTGAAACCAGACCCAGTTCTGAGGAACCTCTTGCTGAGCCTACCCTATAGGAGACTGATCTTCACAAACTCAGACAAAGTCCATGCAGTTAAGGCACTAAGCAGGCTAGGATTAGAAGACTGCTTTGAAGGAATCATATGCTTTGAGACCCTTAATCCCATCCACAAAAGCACTGTCTCTGATGATGAAGATGACATTGAATTTGTGGGGGGTTCAGGCACAACCAATCCAACCACAAAAAAAGATGCTAGCAGCTTTCAAATCTTTGACATCATTGGCCATTTTGCTCAACCCAATCCCCACACAGTTTTGCCAAAGACACCAATTATTTGCAAACCATCAGAAAATGCCATTGAGTTGGCCCTCAAGATAGCCAACCTTAATCCACAAAGAACTTTGTTCTTTGAGGATAGTGTCCGCAACACACAAGCTGGAAAACGTGTGGGTCTTCACACTGTGCTGGTAAGTCATTGGTAGTTTTGTTCAGTAGTAGGAACACTGCCAAACGAATAATGAGGAATCCAAGAATTTTAAGGTGTGGAACTTCACACACATATAATTATGGGGGATACAATGAGAAATTATCAGATAGCTAATTTTTATGTGATTTGTAATTAAGTTTTTTAATTTATGGGAGAAAAAATTAATAACACTTCATTATGTGTTATGTATAAAATAATTGTGATCAAAGGAGTACTAACAACACTCTCTAATACACACTCTATTATTAGTTTAAATTTATTAAAAAAAATTTACAAAATCAAGATAAAAATTTGTTAGTAAAAAAAATGAGATATATCAAATTTTTGTGAATCTCAAGAAATTTTGATACGTAATAAAAAAATGTGTTGAAAAAAGTATCTTAAAGAATATGTTAACATTTCTTTTTGAGAATGTAATAACTTCTCAAGTAAAACACACAATATCCACATAACACATGTAGTATTATGAATAAAAAGAAAAAAAAAATTGTGGGGATAGTTGCTCCCACAAGGCAATCCTTATTGCGTGCCAAACTTATATGAGCCTCTAATTTATTGATTACTACTTTTAGGTTGGAAAATCTCAGAGAATTAAAGGAGCAGATTATGCATTAGAAAGCATCCACAACCTTAGGGAGGCAGTGCCAGAACTATGGGAAGATGACATAAAATCAGAAGTTGCTTATCCTGGCAAGCTTGCTGTGGAGACATCTGTGACTGCTTAGATCATTGATGAACAAAAAAATAAAATAAAAAAATAAGAAAAAGAGAGAGAAAGAGAGAAGTCCTTTGTGAATTTCCCGAGTTGGGATGTAGTAATTGTATGTAGTTGATGTAGATGCTTTGATCATATTACAATTATAATAAAATAATATGTGTAGTTGACGTAGATGCTTTGATAAGATAATAATAAAAAATTAATATAAAATATTAAATTCTCCATTTGGGCCTAGCGTTCATATATATATGTATATTTTTCCGTCGTCTCCATCAACTGAGGAAGATTTGCTTTGCATTAAAGCGCAAGAGAAAAAAAAA

Coding sequences of Glyma07g16020

Limit To All Plant Sequences

>Glyma07g16020.1   sequence type=CDS   gene model=Glyma07g16020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTACATGAACCAGAGACCAAAATATGATTGCCTTCTTTTTGATTTAGATGATACTTTGTATCCACTAAGCACTGGTCTTGCAAAAGCATGTGGCCAAAACATTAAAGACTATATGGCCGAAAAGCTTGGCATAGAGAAAAGCAAAATTGATGACTTGTCCAACCTCCTCTACAAGAACTATGGAACAACTATGGCTGGTTTAAGGGCAATTGGATATGACTTTGACTACGATGAATATCACAGTTTTGTTCATGGGAGATTACCTTATGAGAATTTGAAACCAGACCCAGTTCTGAGGAACCTCTTGCTGAGCCTACCCTATAGGAGACTGATCTTCACAAACTCAGACAAAGTCCATGCAGTTAAGGCACTAAGCAGGCTAGGATTAGAAGACTGCTTTGAAGGAATCATATGCTTTGAGACCCTTAATCCCATCCACAAAAGCACTGTCTCTGATGATGAAGATGACATTGAATTTGTGGGGGGTTCAGGCACAACCAATCCAACCACAAAAAAAGATGCTAGCAGCTTTCAAATCTTTGACATCATTGGCCATTTTGCTCAACCCAATCCCCACACAGTTTTGCCAAAGACACCAATTATTTGCAAACCATCAGAAAATGCCATTGAGTTGGCCCTCAAGATAGCCAACCTTAATCCACAAAGAACTTTGTTCTTTGAGGATAGTGTCCGCAACACACAAGCTGGAAAACGTGTGGGTCTTCACACTGTGCTGGTTGGAAAATCTCAGAGAATTAAAGGAGCAGATTATGCATTAGAAAGCATCCACAACCTTAGGGAGGCAGTGCCAGAACTATGGGAAGATGACATAAAATCAGAAGTTGCTTATCCTGGCAAGCTTGCTGTGGAGACATCTGTGACTGCTTAG

>Glyma07g16020.2   sequence type=CDS   gene model=Glyma07g16020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTACATGAACCAGAGACCAAAATATGATTGCCTTCTTTTTGATTTAGATGATACTTTGTATCCACTAAGCACTGGTCTTGCAAAAGCATGTGGCCAAAACATTAAAGACTATATGGCCGAAAAGCTTGGCATAGAGAAAAGCAAAATTGATGACTTGTCCAACCTCCTCTACAAGAACTATGGAACAACTATGGCTGGTTTAAGGGCAATTGGATATGACTTTGACTACGATGAATATCACAGTTTTGTTCATGGGAGATTACCTTATGAGAATTTGAAACCAGACCCAGTTCTGAGGAACCTCTTGCTGAGCCTACCCTATAGGAGACTGATCTTCACAAACTCAGACAAAGTCCATGCAGTTAAGGCACTAAGCAGGCTAGGATTAGAAGACTGCTTTGAAGGAATCATATGCTTTGAGACCCTTAATCCCATCCACAAAAGCACTGTCTCTGATGATGAAGATGACATTGAATTTGTGGGGGGTTCAGGCACAACCAATCCAACCACAAAAAAAGATGCTAGCAGCTTTCAAATCTTTGACATCATTGGCCATTTTGCTCAACCCAATCCCCACACAGTTTTGCCAAAGACACCAATTATTTGCAAACCATCAGAAAATGCCATTGAGTTGGCCCTCAAGATAGCCAACCTTAATCCACAAAGAACTTTGTTCTTTGAGGATAGTGTCCGCAACACACAAGCTGGAAAACGTGTGGGTCTTCACACTGTGCTGGTTGGAAAATCTCAGAGAATTAAAGGAGCAGATTATGCATTAGAAAGCATCCACAACCTTAGGGAGGCAGTGCCAGAACTATGGGAAGATGACATAAAATCAGAAGTTGCTTATCCTGGCAAGCTTGCTGTGGAGACATCTGTGACTGCTTAG

>Glyma07g16020.3   sequence type=CDS   gene model=Glyma07g16020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTACATGAACCAGAGACCAAAATATGATTGCCTTCTTTTTGATTTAGATGATACTTTGTATCCACTAAGCACTGGTCTTGCAAAAGCATGTGGCCAAAACATTAAAGACTATATGGCCGAAAAGCTTGGCATAGAGAAAAGCAAAATTGATGACTTGTCCAACCTCCTCTACAAGAACTATGGAACAACTATGGCTGGTTTAAGGGCAATTGGATATGACTTTGACTACGATGAATATCACAGTTTTGTTCATGGGAGATTACCTTATGAGAATTTGAAACCAGACCCAGTTCTGAGGAACCTCTTGCTGAGCCTACCCTATAGGAGACTGATCTTCACAAACTCAGACAAAGTCCATGCAGTTAAGGCACTAAGCAGGCTAGGATTAGAAGACTGCTTTGAAGGAATCATATGCTTTGAGACCCTTAATCCCATCCACAAAAGCACTGTCTCTGATGATGAAGATGACATTGAATTTGTGGGGGGTTCAGGCACAACCAATCCAACCACAAAAAAAGATGCTAGCAGCTTTCAAATCTTTGACATCATTGGCCATTTTGCTCAACCCAATCCCCACACAGTTTTGCCAAAGACACCAATTATTTGCAAACCATCAGAAAATGCCATTGAGTTGGCCCTCAAGATAGCCAACCTTAATCCACAAAGAACTTTGTTCTTTGAGGATAGTGTCCGCAACACACAAGCTGGAAAACGTGTGGGTCTTCACACTGTGCTGGTAAGTCATTGGTAG

Predicted protein sequences of Glyma07g16020

Limit To All Plant Sequences

>Glyma07g16020.1   sequence type=predicted peptide   gene model=Glyma07g16020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEYMNQRPKYDCLLFDLDDTLYPLSTGLAKACGQNIKDYMAEKLGIEKSKIDDLSNLLYKNYGTTMAGLRAIGYDFDYDEYHSFVHGRLPYENLKPDPVLRNLLLSLPYRRLIFTNSDKVHAVKALSRLGLEDCFEGIICFETLNPIHKSTVSDDEDDIEFVGGSGTTNPTTKKDASSFQIFDIIGHFAQPNPHTVLPKTPIICKPSENAIELALKIANLNPQRTLFFEDSVRNTQAGKRVGLHTVLVGKSQRIKGADYALESIHNLREAVPELWEDDIKSEVAYPGKLAVETSVTA*

>Glyma07g16020.2   sequence type=predicted peptide   gene model=Glyma07g16020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEYMNQRPKYDCLLFDLDDTLYPLSTGLAKACGQNIKDYMAEKLGIEKSKIDDLSNLLYKNYGTTMAGLRAIGYDFDYDEYHSFVHGRLPYENLKPDPVLRNLLLSLPYRRLIFTNSDKVHAVKALSRLGLEDCFEGIICFETLNPIHKSTVSDDEDDIEFVGGSGTTNPTTKKDASSFQIFDIIGHFAQPNPHTVLPKTPIICKPSENAIELALKIANLNPQRTLFFEDSVRNTQAGKRVGLHTVLVGKSQRIKGADYALESIHNLREAVPELWEDDIKSEVAYPGKLAVETSVTA*

>Glyma07g16020.3   sequence type=predicted peptide   gene model=Glyma07g16020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEYMNQRPKYDCLLFDLDDTLYPLSTGLAKACGQNIKDYMAEKLGIEKSKIDDLSNLLYKNYGTTMAGLRAIGYDFDYDEYHSFVHGRLPYENLKPDPVLRNLLLSLPYRRLIFTNSDKVHAVKALSRLGLEDCFEGIICFETLNPIHKSTVSDDEDDIEFVGGSGTTNPTTKKDASSFQIFDIIGHFAQPNPHTVLPKTPIICKPSENAIELALKIANLNPQRTLFFEDSVRNTQAGKRVGLHTVLVSHW*

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