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Report for Sequence Feature Glyma07g15840
Feature Type: gene_model
Chromosome: Gm07
Start: 15528948
stop: 15544150
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma07g15840
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G02310 AT
Annotation by Michelle Graham. TAIR10: proteolysis 6 | chr5:474279-482552 FORWARD LENGTH=2006
SoyBase E_val: 0 ISS
GO:0006511 GO-bp
Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process
SoyBase N/A ISS
GO:0009737 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus
SoyBase N/A ISS
GO:0010029 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of seed germination
SoyBase N/A ISS
GO:0050994 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of lipid catabolic process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0004842 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity
SoyBase N/A ISS
GO:0008270 GO-mf
Annotation by Michelle Graham. GO Molecular Function: zinc ion binding
SoyBase N/A ISS
KOG1139
KOG
Predicted ubiquitin-protein ligase of the N-recognin family
JGI ISS
PTHR21497 Panther
UBIQUITIN LIGASE E3 ALPHA-RELATED
JGI ISS
PTHR21497:SF6 Panther
UBIQUITIN LIGASE E3 ALPHA
JGI ISS
PF02207 PFAM
Putative zinc finger in N-recognin (UBR box)
JGI ISS
UniRef100_G7L5H7 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: E3 ubiquitin-protein ligase ubr1 n=1 Tax=Medicago truncatula RepID=G7L5H7_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1KJZ0 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KJZ0_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma07g15840
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma07g15840
Paralog Evidence Comments
Glyma18g39750 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma07g15840 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.07g132300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma07g15840
Coding sequences of Glyma07g15840
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma07g15840.1 sequence type=CDS gene model=Glyma07g15840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCCGATAACATGGAAATCGATACACCCTCCGATTCCCAACCGCTCAAGCCTCGCGATCGAGTCGTTCGGAGGCTTGCCCAGTTTGGTGTTCCTGAGGAACAGCTCGACCAACCTGGTTTAGTTGCTTTTGTTAAGGATAAGAGGGCGTTGATACCTGAGCTGGTGTCTGTGATATTGCCTACTGATGCGGAAGTGGCGGATGCATGGCAAGCTAAATTGTCTTCTAAGAAGACGGCGGTGGGTGTGATCATGAAGAAGAGGTTTAACGAGAGCATGGCGTGGTTGCAGTGGTTGATATTTGAGGGCGACCCAGGTGGCGCACTGAGAAGGCTTTCCAAGATGTCTGATGGGCAGAGGGGTGTCTGTGGGTCTGTTTGGGGCAACAGTGATATTGCTTACAGGTGTAGGACATGTGAGCACGACCCAACGTGCGCAATCTGTGTTCCTTGTTTTGAGAATGGGAATCACAAGGGCCATGATTACTTTGTTATATACACGGGCGGCGGTTGCTGTGATTGTGGAGATGTAACAGCATGGAAGCGTGAGGGGTTCTGCTCGATGCATAAGGGTGCAGAGCAGATGCAACCACTTCCGGAGGAATTCGCAAACTCTGTTGCTCCTGTGCTTGGTTCCCTTTTCAATTCTTGGAAAGTCAAGCTAACATTGGCAAGTGAGTCGGTTAATGAAAAAAATCATGCAGCAAATGAGCTAACTTATGCCGTGGTTGATATGCTTTTAGAATTTTGCAAGCATAGTGAGAGTTTGCTCAGTTTTGTTGCTAGGTTGTTGTTCTCTTCTAATGGTTTAATTAACATGCTGGTGAGAGCTGAGAGGTTCTTAACTGAGGTTGTAGTGAAGAAACTCCATGAGCTACTCCTGAAATTGTTAGGAGAACCAAATTTTAAGTATAATTTTGCTAAAGATTTTCTCACTTACTATCCAACTGTCATAAATGAGGCCACAAAAGACAGCAGTGACTCTCCTCTAAAGAAGTACCCACTACTATCCACGTTCTCTGTACAGATACTTACTGTGCCCACTCTTACCCCACGCCTTGTGAAGGAAATCAACCTACTAACCATGCTGTTGGGATGCTTTGAAAATATTTTCATTTCTTGTTCTGAAGATGGACGCTTACAGGTTTCCATGTGGGTAGGTTTATATGAGACAACTATACGTGTTATTGAAGATATTCGGTTTGTTATGAGCCATGTGGTAGTGCCCAAACATGTAACCAATGACCAGCAAGATATCTCAAGAACATGGATGAGACTTCTTTCCTTTGTACAAGGGATGAACCCTCAAAAGAGAGAAACAGGTCAACATATAGAAGATGAAAATGAGCATGTCCATTTGCCTTTTATTTTAGGGCATTCTATTGCCAATATTCACACTCTATTGGTGGATGGGTCATTTTCTGATGCTAGCAAGGGGGAAATGGATGCAGAAATTGTTTGGAGCTCTTGTAAGAATGATTCAGATGATGGAGATAATCTAAGGCATGCAAAGGTAGGACGGAGATCTGAGGAAAGCTCTGCATGTAATGTGACCAGTGGGAATAGTGCCTTAGCTTCTAGAAAGTTTCGTGAGATAAAAGCTGATGACTCTTCTCAGCTGCCTCTTCCACGTTCTGTCACTTTGTTGATATATGAGTGTTTAAGGGCTATTGAGAATTGGTTGAGAGTCGAGAATACCCCTGGTGTAATTCCTAATGCACAATCTCCGAACAGTGGTGCTGTCTGTGATGACAATTTTTCAGCATTTAAGAGAACAATATCTAAGTTTGGAAGGGGTAGATATACATTTGGTAGGCTTACAAGTTCAATTGAAGATCATGGTAAGCAGTGTTCTGAAAATAATGCAATTGATTCAGAAAATACCTATATTCGTCCCACTTTTGATGATAATGCCATGGAAGAAGATTTCCCCTTGGAATCAGATGGTCCACGTTTTTTATCATTGCCTGATTGGCCACAAATAGTCTATGATGTTAGTTCCCAAGATATATCTGTACACATTCCATTACATAGATTGCTTTCCATGCTGTTACAGAAGGCAATGAAAAGATATTTTTGTGAATCTGAAGGGTCAGATGTGACTCATGTTTCTTCAGCTAATTCATTGCTGACTAGCTACAATGACTTCTTCGAACAAGCTTTACGAGGAAGTCATCCATATGGTTTCTCTGCCTATGTAATGGAGCATCCATTGCGGATTAGGGTCTTTTGTGCTGAAGTCCATGCCGGAATGTGGCGTAAAAATGGAGATGCTGCTTTATTATCTTGTGAATTGTATAGATCAGTACGCTGGTCTGAAAAATGTCTGGAGCTTGATCTATTTCTTCTTCAGTGTTGTGCTGCACTAGCTCCAGAGGATCTATTTGTCAGTAGACTTCTGGAGCGCTTTGGGTTGTCAAACTACTTATGTCTAAATCTTGAACGGTCTAGCGAATATGAACCTGTTTTGGTCCAGGAAATGCTTACTCTTATTATTCAGATAGTAAAAGAACGACGCTTTAGTGGGCTAACTACTGCTGAATGTTTGAAAAGAGAACTAATTTATAAGTTATCCATTGGTGATGCCACTCATAGTCATTTGGTTAAGTCTCTTCCTCGTGATCTCTCCAAATTTGAACAACTTCAAGACATCTTGGATACAGTTGCTGTTTATTCCAATCCATCTGGATTTAATCAGGGTATGTTTTCTTTGCGATGGTCATTTTGGAAAGAATTGGATTTGTATCATCCACGTTGGAATTCAAAGGATTTACAAGTTGCTGAAGAAAGATACTTGCGCTTCTGCAGTGTCTCTGCACTAACCACCCAATTGCCCCAGTGGACCAAAATTCATCCTCCTCTAAGGGGGATAGCCAGAGTAGCCACTTGCAAAGTTGTTCTACATATTATCCGTGCTGTGCTATTTTATGCTGTTTTCACTTTTAAATCATCTGAATCTCGTGCTCCTGACAGCGTTCTTCTACCTGCTCTACATTTACTGTCATTATCATTAGATATCTGTTTTCAACAGAAAGAATCTAGTGAGAATACATGCCATGATGTGTCACATCTTCCCATAATTGCCCTCTCTGGAGAAATAATTGAGAGTTCTTTTGGTGAACAAAGCTTGTTGTCACTTCTTGTTTTATTGATGGAAATGCACAGGAAGGAAAATGTCGACAACTTTGTGGAAGCAGGTGGTTGTAGTCTATATTCTCTGATTGAAAGCTTACTGAAGAAATTTGCTGAGATTGACAACAGATGCATGACCAAGTTGCAAAAACTTGCCCCTGAAGTAGTCAGCCATATTTCTGAATGTGTTCCAACTAGAGACTCAAGTGTCTCATCGTCGGCTTCTGATAGTGAGAAACGCAAGGCGAAAGCTCGAGAGAGGCAGGCTGCAATAATGGAAAAAATGAGAGCCCAACAGTCTAAATTCTTGGCCAGCATTGATTCCACTGTTGATGATGGTTCACAACTTGGTCATGAAGGTGACTTAGACACTGAGCAAGATGTAGAAGAATCCGATTCTAAACAAGTTGTTTGCTCCCTTTGTCATGACCACAATTCAAAACATCCTATCTCTTTTTTGATTCTTCTTCAGAAATCTAGGCTCGTGAGTTCCGTTGACAGGGGTCCCCCATCATGGGCCCAACTTTGCCGATCAGATAAAGATCGGACACCTATCATCAACACCAACGAGATGGATACATTGCCTATTAACTGTAATTCAGTTAGTTTGGGATCAACTTCATCTTCCCACTTAAGTCAATTTGTTCAGAATGCTGCAAAAGAATTAGCTTCTTGTGGGAAACCTGGGGAAGTTCTTACTTTTCTGCAATATGTCAAGAATAAGTTCCCAGCTTTGTCAAATTTTCAGCTCCCAGACACATATTATCATGATAAAGAAAATACACCATATACTTTTGAGACTTTAGAACAGGGTATGTACTTCTCCGTGCGTGATGAAATGCATGATCTTCTGCTATCTTCGAATTTGTTGAATGAGGATGAGAAAGTTTCAACTGTGGGAGGGAATTCAAATTTTATAATAGACACTGGATCTGTATTGCTTGGGAAATATACAGCCGATCTTGTGCAAGAGATGTCAGAAGTTTCTTCTGTGTCTGAAAATGCTTCTAATGAGACTGCTTCTGTAGAATCAACATCACAGCATCCAGCATATGATGGATTTGGCCCTACAGATTGCGATGGAGTTCATCTTTCTTCCTGTGGGCATGCAGTACATCAAGGATGTCTTGATCGATATTTATCTTCATTAAAGGAAAGATCTGTCAGAAGAATTGTTTTTGAAGGAGGACATATTGTTGACCCAGATCAGGGAGAGTTTCTCTGCCCAGTGTGCCGCAGACTTGCAAATTGTGTCTTGCCAACTTTACCTGGAGAATTACAGAAGCCTTTCAAGCAGTCTACCATCTTGAGTACTAGTTCAATAAATACTGCACCCCCCTTAGCTGAATTGAGTGAATTGACTTATTCACTTCGTCTCCATCTAGGCTTAAAGCTTCTGCAATCTGCTGCCAATGCAGTTGGGAAGGATAAATTCCTAAATGCTATTCCTTTGCATCACATTGATAGAACTAGAACAAATCTTGAAAAGTTCATATGGGGGCTTTCTAAAATGTATTCCCCTTGCAAAGAAGAAAAGCTATCAAGATTTTCCAGACTAAACCACTCAATGCTGATGTGGGACACTCTCAAGTACTCTTTGACATCAATGGAGATTGCTGCACGGTGTGGAAAGACTTCTTTTACACCAAACTTTGCTCTTAGTGCATTGTATGAAGAACTGAAATCTTCAAGTGGCTTTATATTATCCCTGATGCTGAAACTTGTTCAAAAGACACGAAGTAATAATTCTCTTCATGTTCTACAAAGATTTAGAGGTGTTCAACTCTTGGCAGAATCAATTTGTTCTGGGGTTTCCCTGAATTACGCAAATAATGACGAGTCTGGGAGAGGTGATATGTTAAGTATCTTAAAGCAAATTGAAATGGACTTGTCAAACACCAACATTAGCTTTTGGAGTCAGGCTTCAGATCCTGTACTCCTCCATGACCCTTTCTCAACATTGATGTGGGTTCTTTTTTGTCTACCACACCCATTTTTGTCATGTGAAGAATCCTTGTTATCCCTAGTGCATGTTTTCTATATAGTAGCCGTAACCCAGGCTATAATTTTGTATTATGAGAAATCTAAAGATAAACCATCAAGGGAATCAGCTCTTTCAGATTGCCTGATTACCGACATATATAACGTTATGGATGAGTCTGGATATGCCCAACAGTACTTTGTGTCAAATTATTTTGACCCCAATGTTGATATTAAAAACGCTATTCGGAGGTTTACTTTTCCTTACTTGAGAAGATGTGCGTTGTTGTGGAAGATACTCTATTCTTCTATCCCAGCACCATTCTGTGATGAGGAAAATATATTGGATAGATCATGGAATGCCCCAAAGGACATAATGGACTGGGCCAATATTGAGATATTTGAGGTCGCTAAAATTCAAGAGCTCGAGAAAATGTTCAAAATTCCCTCTCTTGATATGGTTCTCAAGGATGAACTTTCAAGATCTACAGTCTCTATTTGGTGCCATCATTTTTGCAAGGAATTCGACTTGCGCAGAATTCAACAAAATATGCATGTAACACCTGCTGTTCCATTTGAGTTAATGAGATTGCCCAATGTTTATCAGGATCTTTTGCAGAGGTGTATCAAACAGCGCTGCCCTGAATGCAAATCAGTTCTTGATGACCCTGCTTTGTGCCTACTGTGTGGTAGATTGTGCTCTCCAAGTTGGAAATCATGCTGCAGGGAAAGTGGATGCCAAACTCATGCTGTAACCTGTGGAGCTGGTACTGGAGTGTTTCTGTTGATTAAGAGAACAACAATCCTACTACAGAGATCTGCACGTCAGGCCCCCTGGCCCTCTCCTTACTTAGATGCTTTTGGTGAGGAGGATTTTGAAATGCATCGAGGCAAGCCACTTTATCTGAATGAGGAACGCTATGCAGCTTTGACTTATATGGTCGCTTCTCATGGTCTGGACCGGAGTTCCAGGGTCCTTGGTCAGACCACTATTGGTTCCTTCTTCCTGGTTTAG
Predicted protein sequences of Glyma07g15840
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma07g15840.1 sequence type=predicted peptide gene model=Glyma07g15840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MADNMEIDTPSDSQPLKPRDRVVRRLAQFGVPEEQLDQPGLVAFVKDKRALIPELVSVILPTDAEVADAWQAKLSSKKTAVGVIMKKRFNESMAWLQWLIFEGDPGGALRRLSKMSDGQRGVCGSVWGNSDIAYRCRTCEHDPTCAICVPCFENGNHKGHDYFVIYTGGGCCDCGDVTAWKREGFCSMHKGAEQMQPLPEEFANSVAPVLGSLFNSWKVKLTLASESVNEKNHAANELTYAVVDMLLEFCKHSESLLSFVARLLFSSNGLINMLVRAERFLTEVVVKKLHELLLKLLGEPNFKYNFAKDFLTYYPTVINEATKDSSDSPLKKYPLLSTFSVQILTVPTLTPRLVKEINLLTMLLGCFENIFISCSEDGRLQVSMWVGLYETTIRVIEDIRFVMSHVVVPKHVTNDQQDISRTWMRLLSFVQGMNPQKRETGQHIEDENEHVHLPFILGHSIANIHTLLVDGSFSDASKGEMDAEIVWSSCKNDSDDGDNLRHAKVGRRSEESSACNVTSGNSALASRKFREIKADDSSQLPLPRSVTLLIYECLRAIENWLRVENTPGVIPNAQSPNSGAVCDDNFSAFKRTISKFGRGRYTFGRLTSSIEDHGKQCSENNAIDSENTYIRPTFDDNAMEEDFPLESDGPRFLSLPDWPQIVYDVSSQDISVHIPLHRLLSMLLQKAMKRYFCESEGSDVTHVSSANSLLTSYNDFFEQALRGSHPYGFSAYVMEHPLRIRVFCAEVHAGMWRKNGDAALLSCELYRSVRWSEKCLELDLFLLQCCAALAPEDLFVSRLLERFGLSNYLCLNLERSSEYEPVLVQEMLTLIIQIVKERRFSGLTTAECLKRELIYKLSIGDATHSHLVKSLPRDLSKFEQLQDILDTVAVYSNPSGFNQGMFSLRWSFWKELDLYHPRWNSKDLQVAEERYLRFCSVSALTTQLPQWTKIHPPLRGIARVATCKVVLHIIRAVLFYAVFTFKSSESRAPDSVLLPALHLLSLSLDICFQQKESSENTCHDVSHLPIIALSGEIIESSFGEQSLLSLLVLLMEMHRKENVDNFVEAGGCSLYSLIESLLKKFAEIDNRCMTKLQKLAPEVVSHISECVPTRDSSVSSSASDSEKRKAKARERQAAIMEKMRAQQSKFLASIDSTVDDGSQLGHEGDLDTEQDVEESDSKQVVCSLCHDHNSKHPISFLILLQKSRLVSSVDRGPPSWAQLCRSDKDRTPIINTNEMDTLPINCNSVSLGSTSSSHLSQFVQNAAKELASCGKPGEVLTFLQYVKNKFPALSNFQLPDTYYHDKENTPYTFETLEQGMYFSVRDEMHDLLLSSNLLNEDEKVSTVGGNSNFIIDTGSVLLGKYTADLVQEMSEVSSVSENASNETASVESTSQHPAYDGFGPTDCDGVHLSSCGHAVHQGCLDRYLSSLKERSVRRIVFEGGHIVDPDQGEFLCPVCRRLANCVLPTLPGELQKPFKQSTILSTSSINTAPPLAELSELTYSLRLHLGLKLLQSAANAVGKDKFLNAIPLHHIDRTRTNLEKFIWGLSKMYSPCKEEKLSRFSRLNHSMLMWDTLKYSLTSMEIAARCGKTSFTPNFALSALYEELKSSSGFILSLMLKLVQKTRSNNSLHVLQRFRGVQLLAESICSGVSLNYANNDESGRGDMLSILKQIEMDLSNTNISFWSQASDPVLLHDPFSTLMWVLFCLPHPFLSCEESLLSLVHVFYIVAVTQAIILYYEKSKDKPSRESALSDCLITDIYNVMDESGYAQQYFVSNYFDPNVDIKNAIRRFTFPYLRRCALLWKILYSSIPAPFCDEENILDRSWNAPKDIMDWANIEIFEVAKIQELEKMFKIPSLDMVLKDELSRSTVSIWCHHFCKEFDLRRIQQNMHVTPAVPFELMRLPNVYQDLLQRCIKQRCPECKSVLDDPALCLLCGRLCSPSWKSCCRESGCQTHAVTCGAGTGVFLLIKRTTILLQRSARQAPWPSPYLDAFGEEDFEMHRGKPLYLNEERYAALTYMVASHGLDRSSRVLGQTTIGSFFLV*