SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G02410 | AT | Annotation by Michelle Graham. TAIR10: DIE2/ALG10 family | chr5:517319-519634 REVERSE LENGTH=509 | SoyBase | E_val: 0 | ISS |
| GO:0006487 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0048366 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf development | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0016758 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups | SoyBase | N/A | ISS |
| GO:0046527 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: glucosyltransferase activity | SoyBase | N/A | ISS |
| KOG2642 | KOG | Alpha-1,2 glucosyltransferase/transcriptional activator | JGI | ISS | |
| PTHR12989 | Panther | POTASSIUM CHANNEL REGULATOR 1-RELATED | JGI | ISS | |
| PTHR12989:SF10 | Panther | ALPHA-1,2-GLUCOSYLTRANSFERASE ALG10 | JGI | ISS | |
| PF04922 | PFAM | DIE2/ALG10 family | JGI | ISS | |
| UniRef100_G7L3H5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Alpha-1,2-glucosyltransferase ALG10-A n=1 Tax=Medicago truncatula RepID=G7L3H5_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KJX6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KJX6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma07g15720 not represented in the dataset |
Glyma07g15720 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma18g39540 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g131100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g15720.2 sequence type=transcript gene model=Glyma07g15720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAAAAGACCATTTTGTTCCACCATTGTTTTCTTGTGAGAAAAAAGTGTAAACTGAAGACTGAAGAGAGCCGCGGGACCCTATTCCAGCCAAATCCCAGGATTGTGAACACTGACTGAACAAACACCAGAGACAGTATTTGGGGCAGCAATTTTCTTTTCCAGATTCCAAACCTATTTTATTTTTTCTATTTTTCAGTTCATCCTTTTCAAAGTTCTGTTTTATTGAAAACATTTCTCACACCGTCCAACTTCAATTCAACAACCGCCCCTTTTGCAAATTTGGTTCTTTTCTCTTTCTCTGTCACCACTTTCCTTCGTCGTAGGTCACAGCGTGCGCTTCCGCATCACCCGCTTCTCTCTGCAAATGTACAGTTGTTGTTGTGGTCCTGTTATTACTGAAGATTGAGGGGGAAATGGGAAAAATAGCTCTTGCAGTAATAGTGAGCCTATGGGTTATTCCTACCACTGTAATGGTTAATCACATAGTTCCTGAGCCATATATGGATGAAATATTTCATATACCACAGGCACAGCAGTACTGCAAGGGAAAGTTTGGAAGTTGGGACCCTATGATTACCACTCCTCCTGGCCTGTACTATCTTTCACTTGCCCATGTTGCTGCTTTGTTTCCAGGCTTTTACTGGGTAGAAGCTGCTTCATTTTCTGACTTGTGCTCTGCTGCAATTCTTCGATCAATTAATGGTGTCTTAGCAGTTGTCTGCAGTGTAATTCTATATGACATAGTTACTCACTTGAATCCAACACTTAATGATAGGAAGGCGATGCTTCATGCAGTGGTCCTATCCTTGTACCCCCTTCACTGGTTCTTCACTTTTCTCTATTATACAGATGTTGCATCTGTTACTGCAGTGCTGGCTATGTATCTTGCAAGTTTGAAGAAACATTACTGGTTTAGTGCATTGATTGGAGCGTTTGCAGTTATTATTCGGCAAACAAATATTATATGGGTGGTTTTTGTTGCATGCTCTGGGATCATAAATATTTCTGTGACTCATGCAAAGCACCATACAAAAACTGCTGAGTCGGATGTATCTATCCAACATGGGTTGGCATATGCTACTGGTACAAATACAGAGGGTTTCAATCTGAGAAGACGAAGAATTGTTAAATCTAGGGATACCGTTGAGCACTCGTCGTCTAGTTCACATGCTTCTTCTTCCTTTTCTTCAGGTTTTGCTCATGAAATATGGTCCATCCTTTTAACATTATGGTACATGAAGTGGAAGCTTTTAATTTCATTTAGTCCCTATCTCATGGTGGTGGTGGCCTTTCTTTTATTTGTCTATTGGAATGGAAGTGTTGTTCTGGGTGCAAAAGAAGCGCATGCAGTTACCCCACATTTTGCACAGATGCTTTATTTTAGTCTGGTTTCTGTATTGGCTCAGGCTCCTATGCACTTCACTATCACTCAAGCTGTGGACCTGTTTCAGATGTTTCGGAAGAGTAGGCCCCTTCTTTACTTTCAGATGTTTCTGGCCCTTGTTGTTGGCCTGCTTTCAGTACACTTTTTCAGGTGATGTCAGACTCAGATGACTACGTAAACTAGCTAGCAGAATCTGTATTTTGATTGTTAACTATTAAATGC
>Glyma07g15720.1 sequence type=CDS gene model=Glyma07g15720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAAAAATAGCTCTTGCAGTAATAGTGAGCCTATGGGTTATTCCTACCACTGTAATGGTTAATCACATAGTTCCTGAGCCATATATGGATGAAATATTTCATATACCACAGGCACAGCAGTACTGCAAGGGAAAGTTTGGAAGTTGGGACCCTATGATTACCACTCCTCCTGGCCTGTACTATCTTTCACTTGCCCATGTTGCTGCTTTGTTTCCAGGCTTTTACTGGGTAGAAGCTGCTTCATTTTCTGACTTGTGCTCTGCTGCAATTCTTCGATCAATTAATGGTGTCTTAGCAGTTGTCTGCAGTGTAATTCTATATGACATAGTTACTCACTTGAATCCAACACTTAATGATAGGAAGGCGATGCTTCATGCAGTGGTCCTATCCTTGTACCCCCTTCACTGGTTCTTCACTTTTCTCTATTATACAGATGTTGCATCTGTTACTGCAGTGCTGGCTATGTATCTTGCAAGTTTGAAGAAACATTACTGGTTTAGTGCATTGATTGGAGCGTTTGCAGTTATTATTCGGCAAACAAATATTATATGGGTGGTTTTTGTTGCATGCTCTGGGATCATAAATATTTCTGTGACTCATGCAAAGCACCATACAAAAACTGCTGAGTCGGATGTATCTATCCAACATGGGTTGGCATATGCTACTGGTACAAATACAGAGGGTTTCAATCTGAGAAGACGAAGAATTGTTAAATCTAGGGATACCGTTGAGCACTCGTCGTCTAGTTCACATGCTTCTTCTTCCTTTTCTTCAGGTTTTGCTCATGAAATATGGTCCATCCTTTTAACATTATGGTACATGAAGTGGAAGCTTTTAATTTCATTTAGTCCCTATCTCATGGTGGTGGTGGCCTTTCTTTTATTTGTCTATTGGAATGGAAGTGTTGTTCTGGGTGCAAAAGAAGCGCATGCAGTTACCCCACATTTTGCACAGATGCTTTATTTTAGTCTGGTTTCTGTATTGGCTCAGGCTCCTATGCACTTCACTATCACTCAAGCTGTGGACCTGTTTCAGATGTTTCGGAAGAGTAGGCCCCTTCTTTACTTTCAGATGTTTCTGGCCCTTGTTGTTGGCCTGCTTTCAGTACACTTTTTCAGTGTAGCTCATCCATACCTGCTTGCCGATAATCGCCATTACCCTTTTTATCTTTGGAGGAAAGTTATCATGGCTCACTGGCCAATTAAATATCTTTTAGTCCCAGTTTATATATGCTCATGGCTCTCTATGATCCACATGTTGGGAAAATTTAGGAGTAAAATATGGGTATTGGCATACTTCTTGGCTACTGCTGCTGTTCTTGTACCAACTCCACTAATAGAGTTCAGATACTACACTATACCATTCTATTTCCTGGTGCTTCATTGTAACAATTGGGATGATCAAAGTTGGATTCTCACAGGCACACTGTATATTGGTGTCAATATCTTTACAATGATGATGTTTCTGTTTCGGCCATTCCATTGGGATCATGAGCCTGGAATTCAAAGGTTTATATGGTGA >Glyma07g15720.2 sequence type=CDS gene model=Glyma07g15720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAAAAATAGCTCTTGCAGTAATAGTGAGCCTATGGGTTATTCCTACCACTGTAATGGTTAATCACATAGTTCCTGAGCCATATATGGATGAAATATTTCATATACCACAGGCACAGCAGTACTGCAAGGGAAAGTTTGGAAGTTGGGACCCTATGATTACCACTCCTCCTGGCCTGTACTATCTTTCACTTGCCCATGTTGCTGCTTTGTTTCCAGGCTTTTACTGGGTAGAAGCTGCTTCATTTTCTGACTTGTGCTCTGCTGCAATTCTTCGATCAATTAATGGTGTCTTAGCAGTTGTCTGCAGTGTAATTCTATATGACATAGTTACTCACTTGAATCCAACACTTAATGATAGGAAGGCGATGCTTCATGCAGTGGTCCTATCCTTGTACCCCCTTCACTGGTTCTTCACTTTTCTCTATTATACAGATGTTGCATCTGTTACTGCAGTGCTGGCTATGTATCTTGCAAGTTTGAAGAAACATTACTGGTTTAGTGCATTGATTGGAGCGTTTGCAGTTATTATTCGGCAAACAAATATTATATGGGTGGTTTTTGTTGCATGCTCTGGGATCATAAATATTTCTGTGACTCATGCAAAGCACCATACAAAAACTGCTGAGTCGGATGTATCTATCCAACATGGGTTGGCATATGCTACTGGTACAAATACAGAGGGTTTCAATCTGAGAAGACGAAGAATTGTTAAATCTAGGGATACCGTTGAGCACTCGTCGTCTAGTTCACATGCTTCTTCTTCCTTTTCTTCAGGTTTTGCTCATGAAATATGGTCCATCCTTTTAACATTATGGTACATGAAGTGGAAGCTTTTAATTTCATTTAGTCCCTATCTCATGGTGGTGGTGGCCTTTCTTTTATTTGTCTATTGGAATGGAAGTGTTGTTCTGGGTGCAAAAGAAGCGCATGCAGTTACCCCACATTTTGCACAGATGCTTTATTTTAGTCTGGTTTCTGTATTGGCTCAGGCTCCTATGCACTTCACTATCACTCAAGCTGTGGACCTGTTTCAGATGTTTCGGAAGAGTAGGCCCCTTCTTTACTTTCAGATGTTTCTGGCCCTTGTTGTTGGCCTGCTTTCAGTACACTTTTTCAGGTGA
>Glyma07g15720.1 sequence type=predicted peptide gene model=Glyma07g15720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGKIALAVIVSLWVIPTTVMVNHIVPEPYMDEIFHIPQAQQYCKGKFGSWDPMITTPPGLYYLSLAHVAALFPGFYWVEAASFSDLCSAAILRSINGVLAVVCSVILYDIVTHLNPTLNDRKAMLHAVVLSLYPLHWFFTFLYYTDVASVTAVLAMYLASLKKHYWFSALIGAFAVIIRQTNIIWVVFVACSGIINISVTHAKHHTKTAESDVSIQHGLAYATGTNTEGFNLRRRRIVKSRDTVEHSSSSSHASSSFSSGFAHEIWSILLTLWYMKWKLLISFSPYLMVVVAFLLFVYWNGSVVLGAKEAHAVTPHFAQMLYFSLVSVLAQAPMHFTITQAVDLFQMFRKSRPLLYFQMFLALVVGLLSVHFFSVAHPYLLADNRHYPFYLWRKVIMAHWPIKYLLVPVYICSWLSMIHMLGKFRSKIWVLAYFLATAAVLVPTPLIEFRYYTIPFYFLVLHCNNWDDQSWILTGTLYIGVNIFTMMMFLFRPFHWDHEPGIQRFIW* >Glyma07g15720.2 sequence type=predicted peptide gene model=Glyma07g15720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGKIALAVIVSLWVIPTTVMVNHIVPEPYMDEIFHIPQAQQYCKGKFGSWDPMITTPPGLYYLSLAHVAALFPGFYWVEAASFSDLCSAAILRSINGVLAVVCSVILYDIVTHLNPTLNDRKAMLHAVVLSLYPLHWFFTFLYYTDVASVTAVLAMYLASLKKHYWFSALIGAFAVIIRQTNIIWVVFVACSGIINISVTHAKHHTKTAESDVSIQHGLAYATGTNTEGFNLRRRRIVKSRDTVEHSSSSSHASSSFSSGFAHEIWSILLTLWYMKWKLLISFSPYLMVVVAFLLFVYWNGSVVLGAKEAHAVTPHFAQMLYFSLVSVLAQAPMHFTITQAVDLFQMFRKSRPLLYFQMFLALVVGLLSVHFFR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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