SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G21110 | AT | Annotation by Michelle Graham. TAIR10: G10 family protein | chr4:11267673-11268774 FORWARD LENGTH=145 | SoyBase | E_val: 7.00E-91 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| KOG3404 | KOG | G10 protein/predicted nuclear transcription regulator | JGI | ISS | |
| PTHR19411 | Panther | G10 PROTEIN HOMOLOG | JGI | ISS | |
| PF01125 | PFAM | G10 protein | JGI | ISS | |
| UniRef100_B9T6Y0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein G10, putative n=1 Tax=Ricinus communis RepID=B9T6Y0_RICCO | SoyBase | E_val: 2.00E-97 | ISS |
| UniRef100_C6T3U5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T3U5_SOYBN | SoyBase | E_val: 2.00E-104 | ISS |
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Glyma07g15700 not represented in the dataset |
Glyma07g15700 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g130900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g15700.2 sequence type=transcript gene model=Glyma07g15700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATTGAATATTATTCCACTCTTACCCTTTCTGGCTCAGTCGCTCTCCTCTCAAGTCTCACTTCACCGTAACGCGCATGCCTTTGTTTGAAGCTAGCCTTCGTCGAATTCAATTTGTTTTCCCTCTCACGCGGTCCTAAGTGCTAACCTGTATCTGAGATACAAAATGCCAAAAGTAAAGACAAACCGTGTTACATACCCAGAGGGCTGGGAATTAATTGAGCCTACTCTCCATGAACTTCAAGCAAAGATGAGGGAAGCTGAGAACGATCCACATGATGGCAAGAGAAACTGTGAGACATTATGGCCTATATTTAAGATTGCACACCAGAAGAGCCGCTACATATTTGACCTCTATCATCAAAGGAAGGAGATTTCTAAAGAATTGTATGAATTCTGTTTAGATCAAGGATATGCTGACCACAATCTAATTGCAAAATGGAAGAAGCCTGGTTATGAACGTCTATGCTGCTTGGGGTGTATGCAGCCACGCAATCACAATTTTGCCACCACTTGTGTTTGCAGAGTTCCCAAGAACCTTAGGGAGGAGAAGGTTATAGAGTGTGTTCATTGTGGTTGCAAGGGCTGTGCTAGCGGGGACTGAGTGGACATCAATTCTATTATCAGTTGCCAAAAAGGGGGTTTCTTAGGATTATTTTGTTGGTGTTTTTAGCATTCTCCAGATTGTGTTAACTATTTACTACATGAATACTATACTATGTAATGAAAAATATTAGTTAATTGTTAACTATCTGCATAGTTCAAAATCTGAATGGAAAATGAGTAAACCTTACGATCTATTAAATAAAAAATAATTGGTGAAATATATTTCTATC
>Glyma07g15700.1 sequence type=CDS gene model=Glyma07g15700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCAAAAGTAAAGACAAACCGTGTTACATACCCAGAGGGCTGGGAATTAATTGAGCCTACTCTCCATGAACTTCAAGCAAAGATGAGGGAAGCTGAGAACGATCCACATGATGGCAAGAGAAACTGTGAGACATTATGGCCTATATTTAAGATTGCACACCAGAAGAGCCGCTACATATTTGACCTCTATCATCAAAGGAAGGAGATTTCTAAAGAATTGTATGAATTCTGTTTAGATCAAGGATATGCTGACCACAATCTAATTGCAAAATGGAAGAAGCCTGGTTATGAACGTCTATGCTGCTTGGGGTGTATGCAGCCACGCAATCACAATTTTGCCACCACTTGTGTTTGCAGAGTTCCCAAGAACCTTAGGGAGGAGAAGGTTATAGAGTGTGTTCATTGTGGTTGCAAGGGCTGTGCTAGCGGGGACTGA >Glyma07g15700.2 sequence type=CDS gene model=Glyma07g15700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCAAAAGTAAAGACAAACCGTGTTACATACCCAGAGGGCTGGGAATTAATTGAGCCTACTCTCCATGAACTTCAAGCAAAGATGAGGGAAGCTGAGAACGATCCACATGATGGCAAGAGAAACTGTGAGACATTATGGCCTATATTTAAGATTGCACACCAGAAGAGCCGCTACATATTTGACCTCTATCATCAAAGGAAGGAGATTTCTAAAGAATTGTATGAATTCTGTTTAGATCAAGGATATGCTGACCACAATCTAATTGCAAAATGGAAGAAGCCTGGTTATGAACGTCTATGCTGCTTGGGGTGTATGCAGCCACGCAATCACAATTTTGCCACCACTTGTGTTTGCAGAGTTCCCAAGAACCTTAGGGAGGAGAAGGTTATAGAGTGTGTTCATTGTGGTTGCAAGGGCTGTGCTAGCGGGGACTGA
>Glyma07g15700.1 sequence type=predicted peptide gene model=Glyma07g15700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPKVKTNRVTYPEGWELIEPTLHELQAKMREAENDPHDGKRNCETLWPIFKIAHQKSRYIFDLYHQRKEISKELYEFCLDQGYADHNLIAKWKKPGYERLCCLGCMQPRNHNFATTCVCRVPKNLREEKVIECVHCGCKGCASGD* >Glyma07g15700.2 sequence type=predicted peptide gene model=Glyma07g15700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPKVKTNRVTYPEGWELIEPTLHELQAKMREAENDPHDGKRNCETLWPIFKIAHQKSRYIFDLYHQRKEISKELYEFCLDQGYADHNLIAKWKKPGYERLCCLGCMQPRNHNFATTCVCRVPKNLREEKVIECVHCGCKGCASGD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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