Glyma07g15690 - SoyBase

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Report for Sequence Feature Glyma07g15690

Feature Type:	gene_model
Chromosome:	Gm07
Start:	15423273
stop:	15428137
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g15690

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G60010	AT	Annotation by Michelle Graham. TAIR10: ferric reductase-like transmembrane component family protein \| chr5:24160456-24164755 FORWARD LENGTH=886	SoyBase	E_val: 0	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0004601	GO-mf	Annotation by Michelle Graham. GO Molecular Function: peroxidase activity	SoyBase	N/A	ISS
GO:0005506	GO-mf	Annotation by Michelle Graham. GO Molecular Function: iron ion binding	SoyBase	N/A	ISS
GO:0005509	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium ion binding	SoyBase	N/A	ISS
GO:0009055	GO-mf	Annotation by Michelle Graham. GO Molecular Function: electron carrier activity	SoyBase	N/A	ISS
GO:0016175	GO-mf	Annotation by Michelle Graham. GO Molecular Function: superoxide-generating NADPH oxidase activity	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0050660	GO-mf	Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding	SoyBase	N/A	ISS
GO:0050664	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor	SoyBase	N/A	ISS
KOG0039	KOG	Ferric reductase, NADH/NADPH oxidase and related proteins	JGI		ISS
PTHR11972	Panther	NADPH OXIDASE	JGI		ISS
PTHR11972:SF5	Panther	NADPH OXIDASE-RELATED	JGI		ISS
PF01794	PFAM	Ferric reductase like transmembrane component	JGI		ISS
PF08022	PFAM	FAD-binding domain	JGI		ISS
PF08030	PFAM	Ferric reductase NAD binding domain	JGI		ISS
PF08414	PFAM	Respiratory burst NADPH oxidase	JGI		ISS
UniRef100_G7L3G1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Respiratory burst oxidase-like protein n=1 Tax=Medicago truncatula RepID=G7L3G1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KJX2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1KJX2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g15690

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g15690

Paralog	Evidence	Comments
Glyma18g39500	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g15690 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g130800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g15690

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g15690

Limit To All Plant Sequences

>Glyma07g15690.1   sequence type=CDS   gene model=Glyma07g15690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCATCACAAAAAGGAGGCAAAGATGAATCATCAACGTGGATTCTTGAGAGCATTGAGATTGATCCCGTTGTGGGAAGGCCTAAAAGGGATGATGAAGCACCCCCTAATGGAAGCACGGTGCTTAAATCTCCCAATGATGTTGCTGCTGTGAACAACAACAACAACAACAACAACAACAACAACAATGTGAGGAGCAGACTTGGCATTCGGGGGAGTAATGGAGGGAGGAAAATGATGAGGACTGAATCAGGAGCAGCCAGAGGGATTAAGGGTTTACGTTTTCTTGATAGAACGGTCACAGGGAGGGAAACTGATGCATGGAAGTCCATTGAGAAGCGCTTTACTCAGAATGCAGTTGATGGAAAACTCACAAAAGACAAATTTGGAACCTGCATGGGCATGGGGGCAGAATCAAAGGATTTTGCTGGGGAGCTGTATGAGGCTTTGGCAAGGAGAAGGAAAGTCTATGCAGAAAATGGGATATCTTTGGATGAAGCTAAAGTATTCTGGGAGGACATGACCAACAAAGATTTTGAATCTAGGCTTCAAGTGTTCTTTGACATGTGTGACAAGAATGGAGATGGTAAGCTATCAGAAGATGAGGTTAAGGAGGTTATAGTGTTGAGCGCCTCAGCAAATAAGCTAGGAAACCTCAAAATGCATGCTGATGGGTATGCATCTTTGATAATGGAAGAGCTTGACCCTGATCATAATGGATATATAGAGATCTGGCAGCTAGAAACTCTGCTGAAGGAAATGGTTAGTTCTGAAGAAGGCACCAAAAAACTTGATCAATGTAGAGCCATGACTTTGAGTAAAGCTATGATACCGAGCAAGTATAGGACACCAGTGAGCAAATTTCTATCTAAAACCACAGAATTTGCTCTCGATAAATGGAAAAAAATATGGGTTTTCGCGCTTTGGTTGGCCATAAACTTGGTGCTTTTTATTTGGAAATTTAAGCAATACAGGGAAAAGAAAGCCTTTCAAGTCATGGGTTACTGTCTCTGCTTTGCAAAGGGTGCTGCTGAGACTCTCAAGTTCAACATGGCTCTTATTGTCCTAACCATGTGCAGAAGAACACTTACAAAACTAAGAGGATCATTTCTAAGTCGAATCATACCTTTTGATGACAATATAAACTTTCACAAGACGATTGCGGTAGCTGTGGTTATAGGGACTTTTATTCATGTAATGATGCATATCACTTGTGATTTTCCAAGATTAATATCATGCCCAGAAAATAAGTTCTTTTCGATATTTGGGGATGGTTTTAACTATGAGCAGCCTACTTACTACACCCTAGTTAAAAGCATTCCTGGTTTAACTGGAATTCTTATGGTCTTGATTATGGCTTTTACCTTCACTCTAGCGACACATTATTTCAGAAAAAGTGTTGTCAAGTTGCCTTCCCCGTTGCATCGATTGGCTGGTTTCAATGCATTTTGGTATGCTCATCATTTGCTTATTGTGGTTTACATACTCCTGATCATACATGGCTACTTTCTATTTCTCACCAAGGAATGGAACAAGAAGACGACTTGGATGTACCTTGTAGTTCCACTAGCACTCTATGCTTTTGAGAGAATTCACCCGTTTTTCAGGAGTAAAGATCACCGAGTAAGCATCATTAAGGCAATAATATATACAGGAAATGTTCTGGCACTATACATGACCAAACCCCAAGGATTCAAGTATGAAAGTGGAATGTATCTTTTTGTCAAGTGTCCAGATATATCTACTTTTGAATGGCATCCTTTCTCCATCACCTCTGCACCTGGAGATGACTACTTGAGTGTTCATATACGAACCTTGGGAGATTGGACTACAGAGCTTAAAAACACATTTGCACAGGTTTGTGAGCCTCACAATGCTCAACCAAGAAAGGGAAACCTTATGAGGATGGAAACTAGAGCACCAAATTCAACCTATAACCATCCTTCAAAATCAAGAATTAGATATCCAAAGATCCTCATCAAAGGACCCTACGGAGCCCCAGCACAAAGCTATAAGAACTATGATGTTCTCTTTCTCATAGGTCTCGGAATCGGTGCCACACCAATGATCAGTATTCTAAAAGATATGTTGAACAACATGAAGTCAGAAAGCCCTAAAGAGGACTCAGTCCCTAGCAGTAACTCAGATGATCAAATTAAGAAAGGTCCTGAAAGAGCATATTTCTATTGGGTAACAAGAGAGCAGTCATCATTTGAATGGTTTAAAGGTGTCATGGATGATATTGCAGATTATGACTGCGATAATATCATAGAAATGCACAACTATTTGACAAGTGTCTACGAGGAAGGTGATGCAAGGTCCGCGCTTATTGCCATGATTCAGAGGCTGCAACATGCTAAAAATGGAGTTGATGTTGTTTCAGAAAGCCGGATTCGAACACATTTTGCTAGACCAAACTGGAAAAAAGTCTTCACTGAATTAGCAAACGCGCATCAAAGCTCTCGGATAGGTGTATTCTACTGTGGAAGTCCTACTCTTACAAAAACACTGAAGGAACTTTGTCACGAGTTCAGCCTAAAGTCATCTACCCGTTTTCAGTTTCACAAGGAGAACTTCTAA

Predicted protein sequences of Glyma07g15690

Limit To All Plant Sequences

>Glyma07g15690.1   sequence type=predicted peptide   gene model=Glyma07g15690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSQKGGKDESSTWILESIEIDPVVGRPKRDDEAPPNGSTVLKSPNDVAAVNNNNNNNNNNNNVRSRLGIRGSNGGRKMMRTESGAARGIKGLRFLDRTVTGRETDAWKSIEKRFTQNAVDGKLTKDKFGTCMGMGAESKDFAGELYEALARRRKVYAENGISLDEAKVFWEDMTNKDFESRLQVFFDMCDKNGDGKLSEDEVKEVIVLSASANKLGNLKMHADGYASLIMEELDPDHNGYIEIWQLETLLKEMVSSEEGTKKLDQCRAMTLSKAMIPSKYRTPVSKFLSKTTEFALDKWKKIWVFALWLAINLVLFIWKFKQYREKKAFQVMGYCLCFAKGAAETLKFNMALIVLTMCRRTLTKLRGSFLSRIIPFDDNINFHKTIAVAVVIGTFIHVMMHITCDFPRLISCPENKFFSIFGDGFNYEQPTYYTLVKSIPGLTGILMVLIMAFTFTLATHYFRKSVVKLPSPLHRLAGFNAFWYAHHLLIVVYILLIIHGYFLFLTKEWNKKTTWMYLVVPLALYAFERIHPFFRSKDHRVSIIKAIIYTGNVLALYMTKPQGFKYESGMYLFVKCPDISTFEWHPFSITSAPGDDYLSVHIRTLGDWTTELKNTFAQVCEPHNAQPRKGNLMRMETRAPNSTYNHPSKSRIRYPKILIKGPYGAPAQSYKNYDVLFLIGLGIGATPMISILKDMLNNMKSESPKEDSVPSSNSDDQIKKGPERAYFYWVTREQSSFEWFKGVMDDIADYDCDNIIEMHNYLTSVYEEGDARSALIAMIQRLQHAKNGVDVVSESRIRTHFARPNWKKVFTELANAHQSSRIGVFYCGSPTLTKTLKELCHEFSLKSSTRFQFHKENF*

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