SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research




Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma07g15550): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma07g15550): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma07g15550

Feature Type:gene_model
Chromosome:Gm07
Start:15316953
stop:15323070
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G29670AT Annotation by Michelle Graham. TAIR10: atypical CYS HIS rich thioredoxin 2 | chr4:14535772-14537108 REVERSE LENGTH=235 SoyBaseE_val: 2.00E-86ISS
GO:0006662GO-bp Annotation by Michelle Graham. GO Biological Process: glycerol ether metabolic process SoyBaseN/AISS
GO:0045454GO-bp Annotation by Michelle Graham. GO Biological Process: cell redox homeostasis SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009055GO-mf Annotation by Michelle Graham. GO Molecular Function: electron carrier activity SoyBaseN/AISS
GO:0015035GO-mf Annotation by Michelle Graham. GO Molecular Function: protein disulfide oxidoreductase activity SoyBaseN/AISS
GO:0016671GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor SoyBaseN/AISS
KOG0907 KOG Thioredoxin JGI ISS
PTHR10438Panther THIOREDOXIN-RELATED JGI ISS
PTHR10438:SF7Panther THIOREDOXIN JGI ISS
PF00085PFAM Thioredoxin JGI ISS
UniRef100_G7KJV3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Thioredoxin-like protein n=1 Tax=Medicago truncatula RepID=G7KJV3_MEDTR SoyBaseE_val: 1.00E-108ISS
UniRef100_I1KJV9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KJV9_SOYBN SoyBaseE_val: 8.00E-160ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g15550 not represented in the dataset

Glyma07g15550 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma01g00570 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g129600 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma07g15550.1   sequence type=CDS   gene model=Glyma07g15550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACATGTTGATGTTATTCGATTACAGTTTCAGCCCTTTCGGTTCTCCTCTTCCTCTTTCTTCACCCCCTCACCTTTCTCTGCTAAGATCCTATTCTCTCCTCTCGCCTATTCTTCTTCTAGGCCAGCGCCACCAGCTACTCTTGCTTTCCCCCCCAGAAAGCATTTGCTTTCTTTCAAGGTATCTGCAACTGTTGCTGAAACAGGTCAGCCAAAATGGTGGGAAAAGAATGCACCAAATATGATTGACATTCACTCCACGCAAGAATTTCTGAGTGCTATGAGTCAAGCTGGGGATAGACTAGTTATTGTTGAATTTTATGGAACTTGGTGTGCTTCTTGCCGAGCATTATTCCCCAAGCTATGCAGAACAGCTGAAGAACACCCTGAAATTGTTTTCCTCAAAGTAAATTTTGATGAGAATAAGCCAATGTGTAAAAGACTGAATGTTAAAGTACTTCCTTACTTCCACTTTTATCGTGGGACTGAGGGGCAGCTTGAATCATTTTCATGTTCACTTGCCAAGTTTCAAAAAATAAAGGATGCCATCGAGATACATAACACAGCTCGATGCAGCATCGGTCCACCTGTGAGCATTGGCGATCTGCTTGCTGAACCTTCTTCAGTTGCCAAGGATAGACCAGCAGAATCTGTGTAA

>Glyma07g15550.1   sequence type=predicted peptide   gene model=Glyma07g15550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAHVDVIRLQFQPFRFSSSSFFTPSPFSAKILFSPLAYSSSRPAPPATLAFPPRKHLLSFKVSATVAETGQPKWWEKNAPNMIDIHSTQEFLSAMSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKRLNVKVLPYFHFYRGTEGQLESFSCSLAKFQKIKDAIEIHNTARCSIGPPVSIGDLLAEPSSVAKDRPAESV*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo