SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research


Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma07g14881): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma07g14881): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma07g14881

Feature Type:gene_model
Chromosome:Gm07
Start:14738626
stop:14741611
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma07g14881
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G39530AT Annotation by Michelle Graham. TAIR10: Uncharacterised protein family (UPF0497) | chr2:16498659-16499401 REVERSE LENGTH=178 SoyBaseE_val: 3.00E-19ISS
GO:0006865GO-bp Annotation by Michelle Graham. GO Biological Process: amino acid transport SoyBaseN/AISS
GO:0006888GO-bp Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport SoyBaseN/AISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0043090GO-bp Annotation by Michelle Graham. GO Biological Process: amino acid import SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF04535PFAM Domain of unknown function (DUF588) JGI ISS
UniRef100_D7LD60UniRef Annotation by Michelle Graham. Most informative UniRef hit: CASP-like protein ARALYDRAFT_903205 n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=CSPLK_ARALL SoyBaseE_val: 9.00E-17ISS
UniRef100_G7KIJ0UniRef Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Medicago truncatula RepID=G7KIJ0_MEDTR SoyBaseE_val: 3.00E-75ISS

Expression Patterns of Glyma07g14881
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g14881 not represented in the dataset
Glyma07g14881 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma07g14881 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g107600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma07g14881
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma07g14881
>Glyma07g14881.1   sequence type=CDS   gene model=Glyma07g14881   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTATCCAAACCTGTGGCCAACTCGATGCTTTTTCTGAGGATTGTTGCTCTCGCTGCCTCAGCTGCAACTGTGGCCTTACTATTTACTAACAAGGTCAAATTTGATGATGGAACAAAGTTGAGATTTCAAGATTTCTATTCATACCGGTATGAAGCAGTGATAGCAATAATTGGTGGTGCATATTGTATACTGCAGTTACCATTTGCCATATATTATGCGGTAAAGCAGAAGAGGTTGATACGTAATGGGTTCTTGCCAGAATTTGACTTCTTTGGAGACAAGGTAATTTGCGTGCTTCTGGCCACGGGCGTTGGTGTTGGGTTTGCAGTGTCTTTGGAATTTAAGAAGTTCTTCGATGACATATTTGACTCTGTGGGTACCCCAAAGAAGGACCCTACAAGGACCACATATGACAAGTTTTTTGTTCGAGGCATAGTGGCTTCAGCTATTCTCCTTGTTGCATGCCTTTCCATGACTATCGTTTCAATCATCTCCTCCATTAATCGAAGCAGAAGCAAAGGCGTTTTTAATTAA
Predicted protein sequences of Glyma07g14881
>Glyma07g14881.1   sequence type=predicted peptide   gene model=Glyma07g14881   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVSKPVANSMLFLRIVALAASAATVALLFTNKVKFDDGTKLRFQDFYSYRYEAVIAIIGGAYCILQLPFAIYYAVKQKRLIRNGFLPEFDFFGDKVICVLLATGVGVGFAVSLEFKKFFDDIFDSVGTPKKDPTRTTYDKFFVRGIVASAILLVACLSMTIVSIISSINRSRSKGVFN*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo