SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G61670 | AT | Annotation by Michelle Graham. TAIR10: Lung seven transmembrane receptor family protein | chr1:22770132-22772258 FORWARD LENGTH=513 | SoyBase | E_val: 0 | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG2568 | KOG | Predicted membrane protein | JGI | ISS | |
| PTHR21229 | Panther | LUNG SEVEN TRANSMEMBRANE RECEPTOR | JGI | ISS | |
| PTHR21229:SF1 | Panther | PTM1 | JGI | ISS | |
| PF06814 | PFAM | Lung seven transmembrane receptor | JGI | ISS | |
| UniRef100_G7LAR3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Transmembrane protein 87A n=1 Tax=Medicago truncatula RepID=G7LAR3_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0001BA85E0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0001BA85E0 related cluster n=1 Tax=unknown RepID=UPI0001BA85E0 | SoyBase | E_val: 0 | ISS |
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Glyma07g14850 not represented in the dataset |
Glyma07g14850 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g107900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g14850.2 sequence type=CDS gene model=Glyma07g14850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACGACGGCGTTTGAGCGTCACGCGCTTCCTCTGTTTCTGTTTCTGTTTCTGACTCCGATTATCAATGCCTCCATTCACGACTACTCCAACGAACCCTTCACTCATCGCTCCGACGCCTTCTTCTTCCACGGCGGCAGCGAGGCCCTCTTCGCCAAATCCTTCATCAGGTTCGAAACGGTGACGTTTGCGCGTCCTCGCGAGTCCGCGAGCGTGCATGGTAGGATGCAGTCGAACACGGGTTTGGTGGAGGCGATAATCCTTGAGGTTCGGGATCGGAACCGGATCGGAGGCTCGTACCTGAAATCCGATCTGATTTGCTGCGATCCGAAGCTGGCCAAAGACCGCAACTGCAACCTCGGCGAGGTCATCATCCAGAAGAACCCCGACAACCATGAACTCCCCAAACGCATCAAAACCTTCTTCCAAGGTACCGATGAGCAGGTCCAGATGGACGCTGTAACCCTCGAGATCAACGCCACCGGCATGTACTACCTCTACTTCATGTTCTGCGACCCTTCCCTTAAGGGCACCACCATTCAGGGAAGGACCGTGTGGCGAAACCCTAATGGCTACTTACCTGGCAAAATGGCCCCTCTTATGACCCTCTATGGGTTCATGTCACTGGCTTACCTGTTGCTTGGTCTAGCTTGGTTTCTGAGGTTTGTTCAGTTTTGGAAGGATATTATACAGCTGCATTATCATATCACTGCTGTTATTGCTCTTGGAATGTGTGAGATGGCAGTGTGGTACTTTGAGTATGCCAATTTTAACTCCACCGGGACTAGGCCCATGGGGATTACACTCTGGGCCGTTACTTTTACCTCTGTGAAGAAGACGCTGTCGCGGCTTCTACTGTTGGTTGTCTCTATGGGTTATGGGGTTGTCCGCCCCACGCTAGGCGGGAACGTGATTGCCTACAGAGTGCTGCTTCTTGGGCTGCTGTATTTCAGCGCCTCCGAGGCGCTTGAGCTCGTGGAGCATTTGGGAAACATCAATGACTTCTCCGGGAAGACTAAGCTGCTTTTGGTGCTCCCTGTGGTTTGCCTCGACTCGTGCTTCATTCTTTGGATTTTCTCGTCCTTGTCCAAGACCTTGGAGAAACTGCAGACAAGGAGAAACTTGGCTAAACTGGAGCTCTACCGAAAGTTTACAAACACGCTCGCGGTGTCTGTGCTGCTGTCCATTGCGTGGATTGGCTTTGAGCTATACTTCAATGCCACTGATCCATTGAGTGAATTGTGGCAAATTGCTTGGATTATTCCAGCTTTCTGGTGTCTGCTTTCATATGCTCTCTTGGTGGTGATATGCATCCTTTGGGCTCCATCACGGAACCCTACTAGATATGCATACATGGAGGAAACGGGAGATGACTTTGATGAGGAGGGTATCTCTCTGACAAGCAGTGTAGCGAAGATAAGTGGGGATGTGGCAGCCAAGCTTGATCGGAAGGCCATTGATCACGCCTTCGGAGAAGATCTTGAGGAAGATAAGCGAGAATAA
>Glyma07g14850.2 sequence type=predicted peptide gene model=Glyma07g14850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTTAFERHALPLFLFLFLTPIINASIHDYSNEPFTHRSDAFFFHGGSEALFAKSFIRFETVTFARPRESASVHGRMQSNTGLVEAIILEVRDRNRIGGSYLKSDLICCDPKLAKDRNCNLGEVIIQKNPDNHELPKRIKTFFQGTDEQVQMDAVTLEINATGMYYLYFMFCDPSLKGTTIQGRTVWRNPNGYLPGKMAPLMTLYGFMSLAYLLLGLAWFLRFVQFWKDIIQLHYHITAVIALGMCEMAVWYFEYANFNSTGTRPMGITLWAVTFTSVKKTLSRLLLLVVSMGYGVVRPTLGGNVIAYRVLLLGLLYFSASEALELVEHLGNINDFSGKTKLLLVLPVVCLDSCFILWIFSSLSKTLEKLQTRRNLAKLELYRKFTNTLAVSVLLSIAWIGFELYFNATDPLSELWQIAWIIPAFWCLLSYALLVVICILWAPSRNPTRYAYMEETGDDFDEEGISLTSSVAKISGDVAAKLDRKAIDHAFGEDLEEDKRE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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