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Report for Sequence Feature Glyma07g14641

Feature Type:gene_model
Chromosome:Gm07
Start:14366904
stop:14370346
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma07g14641
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G42200AT Annotation by Michelle Graham. TAIR10: squamosa promoter binding protein-like 9 | chr2:17587601-17589451 FORWARD LENGTH=375 SoyBaseE_val: 3.00E-34ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0010228GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem SoyBaseN/AISS
GO:0048366GO-bp Annotation by Michelle Graham. GO Biological Process: leaf development SoyBaseN/AISS
GO:0048653GO-bp Annotation by Michelle Graham. GO Biological Process: anther development SoyBaseN/AISS
GO:2000025GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of leaf formation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
PF03110PFAM SBP domain JGI ISS
UniRef100_B9RD49UniRef Annotation by Michelle Graham. Most informative UniRef hit: Squamosa promoter-binding protein, putative n=1 Tax=Ricinus communis RepID=B9RD49_RICCO SoyBaseE_val: 5.00E-60ISS
UniRef100_UPI00023377B1UniRef Annotation by Michelle Graham. Best UniRef hit: UPI00023377B1 related cluster n=1 Tax=unknown RepID=UPI00023377B1 SoyBaseE_val: 2.00E-148ISS

Expression Patterns of Glyma07g14641
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g14641 not represented in the dataset
Glyma07g14641 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g14641
ParalogEvidenceComments
Glyma03g27195 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g14641 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g109500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma07g14641
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma07g14641
>Glyma07g14641.1   sequence type=CDS   gene model=Glyma07g14641   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACTTTGGAGAGAACAACATGTTCAGCCTTAACACCCACACCAAAGAGGAAAACGAAAACACTCCTAACAATAACAACAACATTGTCAATGTTTGGTATTCATCATGGGATGCTACTACTACTAATAGTAATACACTACACACCTCCACCACGGCGGCGGAAGGCTACGCCGGCGGAAGTCACAGCCACCACCACCAGCAACTATACGGCGGTGAAGGGTGTCACGTGCAGGCTGACCCTCACCTCACGTGCTTGCATCTTGGTAAAAGACATTACTTTGAGGATGTTACAACTAACGGTGATGTTAACAATGCTACCCCTTTGGGGAACCGACACGTGTGCAGTGGTGGTGGTGCGGGTTATGTTTTTGCGGGTAACGATAAGAGAGGGAGGGGGTATTATAGAGGAGGAGGAGCGGCTGGTGGTGGGAAAACGGCGCCGTTTGCGATGGTTCCTCGATGTCAGGTGGAGGGATGCCACGTGGCGCTGGTGAACGCGAAGGAGTACCACAGGAGGCACAGAGTTTGCGATATGCATTCCAAGGCACCCAAAGCAGTGGTGTTAGGGTTGGAGCAGAGATTCTGTCAGCAGTGTAGCAGGTTTCATGTGGTGTCAGAGTTTGATGATTCAAAGAGGAGTTGTAGGAGGAGATTGGCGGGCCATAACGAGCGAAGAAGAAAGAGCTCTCACCTTTCTGTTACTAGGAATTCTAGACAAGGGTGTGCTCTCTCTCTTCTGTCATCTGGGAGTGGAAGTAGGGATCATCATAATTGGCTATCTCATCATGCGGATTTCTCCACAAGATGCAGTGCAGCATTGCGTGAATTGATAGCAGAAAATCGTGCTGCCCTAATGACTAGACAACAACAACAACTTGTTTATGATCGAGTTTGGCCTCATCTTGTTGTGGCGCCCCACCATGATGCGGATGCTGCAGTGGAAGAAGAAGACTTTGAGGACTTACAACAACAACAACAACCTGAGTCCAATTATTTTCCACAACATATGTTTCCACAGACACAATAA
Predicted protein sequences of Glyma07g14641
>Glyma07g14641.1   sequence type=predicted peptide   gene model=Glyma07g14641   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDFGENNMFSLNTHTKEENENTPNNNNNIVNVWYSSWDATTTNSNTLHTSTTAAEGYAGGSHSHHHQQLYGGEGCHVQADPHLTCLHLGKRHYFEDVTTNGDVNNATPLGNRHVCSGGGAGYVFAGNDKRGRGYYRGGGAAGGGKTAPFAMVPRCQVEGCHVALVNAKEYHRRHRVCDMHSKAPKAVVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSHLSVTRNSRQGCALSLLSSGSGSRDHHNWLSHHADFSTRCSAALRELIAENRAALMTRQQQQLVYDRVWPHLVVAPHHDADAAVEEEDFEDLQQQQQPESNYFPQHMFPQTQ*






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