SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G01710 | AT | Annotation by Michelle Graham. TAIR10: ARP2/3 complex 16 kDa subunit (p16-Arc) | chr4:735776-736450 FORWARD LENGTH=132 | SoyBase | E_val: 5.00E-75 | ISS |
| GO:0007015 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin filament organization | SoyBase | N/A | ISS |
| GO:0009825 | GO-bp | Annotation by Michelle Graham. GO Biological Process: multidimensional cell growth | SoyBase | N/A | ISS |
| GO:0010090 | GO-bp | Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis | SoyBase | N/A | ISS |
| GO:0030036 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0030041 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin filament polymerization | SoyBase | N/A | ISS |
| GO:0030833 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of actin filament polymerization | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005856 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoskeleton | SoyBase | N/A | ISS |
| GO:0005885 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Arp2/3 protein complex | SoyBase | N/A | ISS |
| GO:0003779 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: actin binding | SoyBase | N/A | ISS |
| KOG3380 | KOG | Actin-related protein Arp2/3 complex, subunit ARPC5 | JGI | ISS | |
| PTHR12644 | Panther | ARP2/3 COMPLEX 16 KD SUBUNIT (P16-ARC) | JGI | ISS | |
| PF04699 | PFAM | ARP2/3 complex 16 kDa subunit (p16-Arc) | JGI | ISS | |
| UniRef100_I1KJL3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Actin-related protein 2/3 complex subunit 5 n=1 Tax=Glycine max RepID=I1KJL3_SOYBN | SoyBase | E_val: 4.00E-94 | ISS |
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Glyma07g14260 not represented in the dataset |
Glyma07g14260 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g26690 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g112500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g14260.2 sequence type=transcript gene model=Glyma07g14260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTACTTGCACCGTGAAGGGACTCTCTCTCTCTCTTCACCTTCATTTCTTCACTTGTTGGTTGGTTCATCTATGGCAGGAGCAGAAGGGTTCGTTGAAGCAGATAATGCAGAGGCCATAATTACCAGAATTGAACACAAATCCCGCAAGATCGAAACTTTACTCAAACAGTATAAGCCCGTGGAAGCCCTTAAAACTGCCCTTGAAGGCACATATGCGATCATTGGGGATGAGCGTTGCAAGTCGGCTCACTGGCTTGTGGTGCACAGAGCTATAATGGCTATAAAAGATGTGGATGGGATGCTTTCTTCCTTGGATCCTGAGTACTATGATATCCTAATGAAAGGGCGAGCCCTGATGCAGCGGTAAAGTTGTGCCTTGGTGACTTGTTGGTCATGGGTTCGAATCCGGAAACAGCCTCTTTGCATATGTAAGGGTACTTGTATAGAGGATTAGCTACAGGAGATCGTCCCACGTGTGACCAATGTCTTCGGATTCATGAAAAGTTGACAGAGAAAGCAGGACTAGGTTGCATCCTACGTTTCCTCACTGATACTGTAAATACAGTTTGATTTCTGGACTACTTTTTATTTGGAATTCTTTGTTCTTTTCCTTTTGATGTTTTCAATTTTATTTTATGTTTGCAAGACTACTGCAATCAATGTGGTGAAATATAAGGGAAATGTAATAATTTTGAATTCATTTCTCCAGTTTTGCTATTTTGAAACTGTTTACAATTCAAAATAACATGGTTTTTATCTTTTCATGACTTGTTGAGAAATATGAATATTGAGCTTGAAGTTCATC
>Glyma07g14260.1 sequence type=CDS gene model=Glyma07g14260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGGAGCAGAAGGGTTCGTTGAAGCAGATAATGCAGAGGCCATAATTACCAGAATTGAACACAAATCCCGCAAGATCGAAACTTTACTCAAACAGTATAAGCCCGTGGAAGCCCTTAAAACTGCCCTTGAAGGCACATATGCGATCATTGGGGATGAGCGTTGCAAGTCGGCTCACTGGCTTGTGGTGCACAGAGCTATAATGGCTATAAAAGATGTGGATGGGATGCTTTCTTCCTTGGATCCTGAGTACTATGATATCCTAATGAAGTACTTGTATAGAGGATTAGCTACAGGAGATCGTCCCACGTGTGACCAATGTCTTCGGATTCATGAAAAGTTGACAGAGAAAGCAGGACTAGGTTGCATCCTACGTTTCCTCACTGATACTGTAAATACAGTTTGA >Glyma07g14260.2 sequence type=CDS gene model=Glyma07g14260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGGAGCAGAAGGGTTCGTTGAAGCAGATAATGCAGAGGCCATAATTACCAGAATTGAACACAAATCCCGCAAGATCGAAACTTTACTCAAACAGTATAAGCCCGTGGAAGCCCTTAAAACTGCCCTTGAAGGCACATATGCGATCATTGGGGATGAGCGTTGCAAGTCGGCTCACTGGCTTGTGGTGCACAGAGCTATAATGGCTATAAAAGATGTGGATGGGATGCTTTCTTCCTTGGATCCTGAGTACTATGATATCCTAATGAAAGGGCGAGCCCTGATGCAGCGGTAA
>Glyma07g14260.1 sequence type=predicted peptide gene model=Glyma07g14260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAGAEGFVEADNAEAIITRIEHKSRKIETLLKQYKPVEALKTALEGTYAIIGDERCKSAHWLVVHRAIMAIKDVDGMLSSLDPEYYDILMKYLYRGLATGDRPTCDQCLRIHEKLTEKAGLGCILRFLTDTVNTV* >Glyma07g14260.2 sequence type=predicted peptide gene model=Glyma07g14260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAGAEGFVEADNAEAIITRIEHKSRKIETLLKQYKPVEALKTALEGTYAIIGDERCKSAHWLVVHRAIMAIKDVDGMLSSLDPEYYDILMKGRALMQR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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