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Report for Sequence Feature Glyma07g14060

Feature Type:gene_model
Chromosome:Gm07
Start:13436536
stop:13437981
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma07g14060
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G47220AT Annotation by Michelle Graham. TAIR10: ethylene responsive element binding factor 2 | chr5:19172023-19172754 REVERSE LENGTH=243 SoyBaseE_val: 2.00E-36ISS
GO:0002679GO-bp Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009693GO-bp Annotation by Michelle Graham. GO Biological Process: ethylene biosynthetic process SoyBaseN/AISS
GO:0009723GO-bp Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus SoyBaseN/AISS
GO:0009737GO-bp Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus SoyBaseN/AISS
GO:0009864GO-bp Annotation by Michelle Graham. GO Biological Process: induced systemic resistance, jasmonic acid mediated signaling pathway SoyBaseN/AISS
GO:0009873GO-bp Annotation by Michelle Graham. GO Biological Process: ethylene mediated signaling pathway SoyBaseN/AISS
GO:0010200GO-bp Annotation by Michelle Graham. GO Biological Process: response to chitin SoyBaseN/AISS
GO:0035556GO-bp Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
PF00847PFAM AP2 domain JGI ISS
UniRef100_I1KJK4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KJK4_SOYBN SoyBaseE_val: 5.00E-152ISS
UniRef100_Q8LLR3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ethylene-responsive element binding protein 1 n=1 Tax=Glycine max RepID=Q8LLR3_SOYBN SoyBaseE_val: 2.00E-51ISS

Expression Patterns of Glyma07g14060
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g14060
ParalogEvidenceComments
Glyma03g26520 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g14060 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g114000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma07g14060
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma07g14060
>Glyma07g14060.1   sequence type=CDS   gene model=Glyma07g14060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACCACAATATCTTGTGATTTCTCTTCAATGGAATCTATTCAACACTATCTTCTTGAGCCTGAACACGATTCCAACGCTCTCATGAACATTTCCAACCACGAAGTTTGCTATTCTGCAACGTACAATGCATTCCCAAGCCCTACGTTCAGCTTGGAGGGTGTCGTCCATGATGCAAACGATTCCTTAGCATGCAAAAGAGAACACCCTAGGGAGGAGCGTGAAGTTCACGCGCCACCGGTATGGAAGCATTACCGGGGTGTGAGGCGTAGGACTTGGGGCAAGTTCGCGGCAGAGATAAGGGATCCAAAGAAGAATGGTGCAAGGATTTGGCTAGGCACTTATGAAACTGAAGAAGCAGCGGGTTTAGCTTATGATAGAGCTGCTTTCAAAATGCGTGGCAGCAAAGCTAAGTTAAATTTTCCTCATCTCATTGGCTCTCACGCGCCTCCGCAGCCAGTGAGAGTGACAAAGGCTTTGAAGCGAAACTCGCCAGAGAAGAGGAAAAATTTGGCTGACTTGTTAAACAGGTTGGCCAAGAATAGAAGCCAAATACTTATACAGGTGCTTGAAATGGGTTTACATGCAAATTATGTCAATGTTGAACAATGGTAG
Predicted protein sequences of Glyma07g14060
>Glyma07g14060.1   sequence type=predicted peptide   gene model=Glyma07g14060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATTISCDFSSMESIQHYLLEPEHDSNALMNISNHEVCYSATYNAFPSPTFSLEGVVHDANDSLACKREHPREEREVHAPPVWKHYRGVRRRTWGKFAAEIRDPKKNGARIWLGTYETEEAAGLAYDRAAFKMRGSKAKLNFPHLIGSHAPPQPVRVTKALKRNSPEKRKNLADLLNRLAKNRSQILIQVLEMGLHANYVNVEQW*






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