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Report for Sequence Feature Glyma07g13980

Feature Type:gene_model
Chromosome:Gm07
Start:13337040
stop:13337762
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma07g13980
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G44840AT Annotation by Michelle Graham. TAIR10: ethylene-responsive element binding factor 13 | chr2:18495440-18496120 FORWARD LENGTH=226 SoyBaseE_val: 7.00E-57ISS
GO:0002679GO-bp Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0006612GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane SoyBaseN/AISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0009414GO-bp Annotation by Michelle Graham. GO Biological Process: response to water deprivation SoyBaseN/AISS
GO:0009723GO-bp Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus SoyBaseN/AISS
GO:0009733GO-bp Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus SoyBaseN/AISS
GO:0009737GO-bp Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus SoyBaseN/AISS
GO:0009738GO-bp Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway SoyBaseN/AISS
GO:0009753GO-bp Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus SoyBaseN/AISS
GO:0009863GO-bp Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway SoyBaseN/AISS
GO:0009867GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway SoyBaseN/AISS
GO:0009873GO-bp Annotation by Michelle Graham. GO Biological Process: ethylene mediated signaling pathway SoyBaseN/AISS
GO:0010200GO-bp Annotation by Michelle Graham. GO Biological Process: response to chitin SoyBaseN/AISS
GO:0010363GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response SoyBaseN/AISS
GO:0035556GO-bp Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction SoyBaseN/AISS
GO:0042538GO-bp Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response SoyBaseN/AISS
GO:0043069GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
PF00847PFAM AP2 domain JGI ISS
UniRef100_Q8L9K1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ethylene-responsive transcription factor 13 n=1 Tax=Arabidopsis thaliana RepID=ERF99_ARATH SoyBaseE_val: 3.00E-54ISS
UniRef100_UPI000233809AUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233809A related cluster n=1 Tax=unknown RepID=UPI000233809A SoyBaseE_val: 2.00E-176ISS

Expression Patterns of Glyma07g13980
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g13980
ParalogEvidenceComments
Glyma03g26310 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g13980 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g114300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma07g13980
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma07g13980
>Glyma07g13980.2   sequence type=CDS   gene model=Glyma07g13980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCCCTCATGCTTTAAACACCAACGTGAATGCCCTTCATGACATTGGGCTCCCTGTATCGACACCATTTAAGGATGCTTCCGCGTCAGTGCCATCGACGGCAGTGTTTGGCCGGAACTCCAGCTTCCGGAACATTTTCTTGGCGAAGAACTGGGCAGAGCTTCCGTTGAAGGAGGATAACGCCGAAGACATGGTTATCTACGGTGTTCTGCGTGAGGCCGCCACCATGGGATGGCTCCCCGCCAATGGCAATGGGGTGAGCAAGGTAGGGATGGCTGTGAAAATGGAAAATGAGAGTCAAAATAGTGACAAAGCAGCTGCGTGTGGCACTCACGTGCCTCCAAGGAGGGGGTTGAGCTTCCGAGGCGTGCGGAGGAGGCCATGGGGAAAGTACGCGGCCGAGATAAGGGATGCTAAGAGGAATGGTGTGAGAGTGTGGCTTGGGACCTATGAGACTGCTGAAAATGCAGCTTTGGCTTATGATCGAGCCGCGTTTAAGATGCATGGCTCAAAAGCAAAGCTGAATTTTCCTCATTTAATTGCCTCGGCTCATCATCATGTCGAGCCAATTAGGATTGCCTTAAAGAAACATTCATTCGATGTTTCCTTGTCATCGTCGGAGGTGGCAGCAAAACGGAGTAAGAATGGCACTGCTTCCACAAATTTGGAGCTGAATGACTCAAATATGTTACAGTTTCCTATGGACAATAGGTGGCAATAA
Predicted protein sequences of Glyma07g13980
>Glyma07g13980.2   sequence type=predicted peptide   gene model=Glyma07g13980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSPHALNTNVNALHDIGLPVSTPFKDASASVPSTAVFGRNSSFRNIFLAKNWAELPLKEDNAEDMVIYGVLREAATMGWLPANGNGVSKVGMAVKMENESQNSDKAAACGTHVPPRRGLSFRGVRRRPWGKYAAEIRDAKRNGVRVWLGTYETAENAALAYDRAAFKMHGSKAKLNFPHLIASAHHHVEPIRIALKKHSFDVSLSSSEVAAKRSKNGTASTNLELNDSNMLQFPMDNRWQ*






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